View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_9 (Length: 383)
Name: NF20214_low_9
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 20 - 367
Target Start/End: Original strand, 2108887 - 2109239
Alignment:
| Q |
20 |
atagataaaacaaaaaagaagctaatttaaccagatttgtaaataaacagaagggttaaataagtttttagttcttattataaatataacgaattttata |
119 |
Q |
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| T |
2108887 |
atagataaaacaaaaaagaagctactttaaccagatttgtaaataaacagatgagttaaataagtttttagttcttattataaatataacgaattttata |
2108986 |
T |
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| Q |
120 |
gggatcaaaacataacagnnnnnnnnatgaggactaaaacgaaattgattatatttatagaacaaggagaaccgggagaacaaaaatacagtgcagggtt |
219 |
Q |
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| T |
2108987 |
gggatcaaaacatgtcagttttttt-ataaggactaaaacgaaattgattatatttatagaacaagcagaaccgggagaacaaaaatacagtgcagggtt |
2109085 |
T |
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| Q |
220 |
tca-atgtgagccacggtcacctcactgtgaatagtaattataaggtcc----aataaataaatatgtaagcacattaatgaacaatgattaaacaagtt |
314 |
Q |
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| T |
2109086 |
tcatatgtgagccacggtcacctcactgggaatagtaattataaggcccaataaataaataaatatgtaaacacattaatgaacaatgattaaacaagtt |
2109185 |
T |
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| Q |
315 |
taac-aatctggaagcattttgcacaagcacgtgtaagaggataatattaaaat |
367 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2109186 |
taacaaatctggaagcattttgcacaagcacgtgcaagaggataatattaaaat |
2109239 |
T |
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