View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20215_high_3 (Length: 420)
Name: NF20215_high_3
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 4258913 - 4259315
Alignment:
| Q |
1 |
gtggacccaagaactgggtcattgaacatgtgaaaatggtaactattgtagagaaggttggttcaaattctgtagacttcagctatcgcactattcatca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
4258913 |
gtggaccgaagaactgggtcattgaacatgtgaaaatggtaactgttgtagagaaggttggttcaaattctgtagaattcagctatcgcactattcgtca |
4259012 |
T |
|
| Q |
101 |
tccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataattatcaaggcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259013 |
tccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataattatcaaggcaaag |
4259112 |
T |
|
| Q |
201 |
tttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatatgtaactccctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259113 |
tttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatatgtaactccctct |
4259212 |
T |
|
| Q |
301 |
cgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttcttcattcattcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259213 |
cgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttcttcattcattcat |
4259312 |
T |
|
| Q |
401 |
att |
403 |
Q |
| |
|
||| |
|
|
| T |
4259313 |
att |
4259315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 4262535 - 4262937
Alignment:
| Q |
1 |
gtggacccaagaactgggtcattgaacatgtgaaaatggtaactattgtagagaaggttggttcaaattctgtagacttcagctatcgcactattcatca |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
4262535 |
gtggaccgaagaactgggtcattgaacatgtgaaaatggtaactgttgtagagaaggttggttcaaattctgtagaattcagctatcgcactattcgtca |
4262634 |
T |
|
| Q |
101 |
tccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataattatcaaggcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4262635 |
tccaaggagtacatgaatcagaagttgaaaggtatcattttcgtctaattatatagcatatttgtatgtagtataatactttataattatcaaggcaaag |
4262734 |
T |
|
| Q |
201 |
tttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatatgtaactccctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4262735 |
tttgtcttctatattgcaatttttcatgagtttttggcgaagccacatgtttataaaattcttctgtaaagtagaatcattcatatatgtaactccctct |
4262834 |
T |
|
| Q |
301 |
cgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttcttcattcattcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4262835 |
cgttttgattttgctccatatatatttgtaggcttctcaatgtggatggaacttggaagtttcagattctcaatattttacagtttcttcattcattcat |
4262934 |
T |
|
| Q |
401 |
att |
403 |
Q |
| |
|
||| |
|
|
| T |
4262935 |
att |
4262937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University