View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20215_high_7 (Length: 346)

Name: NF20215_high_7
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20215_high_7
NF20215_high_7
[»] chr4 (5 HSPs)
chr4 (7-135)||(37302770-37302898)
chr4 (231-346)||(37302536-37302655)
chr4 (146-183)||(37302709-37302746)
chr4 (300-346)||(23465773-23465819)
chr4 (313-346)||(39334314-39334347)
[»] chr7 (5 HSPs)
chr7 (300-346)||(2755912-2755958)
chr7 (300-344)||(4237048-4237092)
chr7 (231-263)||(28089959-28089991)
chr7 (313-345)||(29644903-29644935)
chr7 (300-344)||(38449974-38450018)
[»] chr3 (4 HSPs)
chr3 (300-346)||(44405262-44405308)
chr3 (300-346)||(20189431-20189477)
chr3 (300-346)||(55481502-55481548)
chr3 (300-344)||(35233904-35233948)
[»] chr2 (4 HSPs)
chr2 (300-346)||(3106955-3107001)
chr2 (300-345)||(36207136-36207181)
chr2 (261-289)||(10857463-10857491)
chr2 (231-263)||(39957894-39957926)
[»] chr1 (3 HSPs)
chr1 (231-267)||(3272946-3272982)
chr1 (300-346)||(21247424-21247470)
chr1 (313-346)||(29487447-29487480)
[»] chr8 (2 HSPs)
chr8 (300-346)||(25630340-25630386)
chr8 (313-346)||(37746462-37746495)
[»] chr6 (2 HSPs)
chr6 (300-346)||(6138255-6138301)
chr6 (300-346)||(25404242-25404288)
[»] chr5 (4 HSPs)
chr5 (300-346)||(34217199-34217245)
chr5 (300-346)||(38424854-38424900)
chr5 (300-344)||(5577271-5577315)
chr5 (300-344)||(38090493-38090537)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 37302898 - 37302770
Alignment:
Q  7 ccaccttccttaatacaacccccttcaacctcatacattgttgttaaatatttgtgagtgatacatnnnnnnntacgtgacaattatcactgaaaaacaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  37302898 ccaccttccttaatacaacccccttcaacctcatacattgttgctaaatatttgtgagtgatacataaaaaaatacgtgacaattatcactgaaaaacaa 37302799  T
Q  107 aagttagataaatatttgtcattgaaact 135  Q
    |||||||||||||||||||||||||||||    
T  37302798 aagttagataaatatttgtcattgaaact 37302770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 346
Target Start/End: Complemental strand, 37302655 - 37302536
Alignment:
Q  231 taatccgagggaaccaatctcatcgcccacttgtgggtgccacgtcagcgaagtctaagcc---nnnnnnnntataaacttttatgttcat-gggacatt 326  Q
    |||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||           |||||||||||| |||||| ||| ||||    
T  37302655 taatccgaagggaccaatcccatcgcccacttgtgggtgccacgtcagcgaagtttaagccaaaaaaaaaaatataaacttttaagttcatgggggcatt 37302556  T
Q  327 ttgcacataagtgcaaaact 346  Q
    |||||||||| |||||||||    
T  37302555 ttgcacataactgcaaaact 37302536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 37302746 - 37302709
Alignment:
Q  146 ctcaaaaacaagtatatgttataatcattataaaaaca 183  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37302746 ctcaaaaacaagtatatgttataatcattataaaaaca 37302709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 23465819 - 23465773
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||||  ||||||||||||||||||||||||||||    
T  23465819 tataaatttttaagttcgggggacattttgcacataagtgcaaaact 23465773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Original strand, 39334314 - 39334347
Alignment:
Q  313 gttcatgggacattttgcacataagtgcaaaact 346  Q
    ||||||||| ||||||||||||||||||||||||    
T  39334314 gttcatgggccattttgcacataagtgcaaaact 39334347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 2755912 - 2755958
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  2755912 tataaatttttaagttcatggggcattttgcacataagtgcaaaact 2755958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 4237048 - 4237092
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaa 344  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||||    
T  4237048 tataaacttttaagtttatggggcattttgcacataagtgcaaaa 4237092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 28089991 - 28089959
Alignment:
Q  231 taatccgagggaaccaatctcatcgcccacttg 263  Q
    ||||||||||| |||||||||||||||||||||    
T  28089991 taatccgaggggaccaatctcatcgcccacttg 28089959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 29644903 - 29644935
Alignment:
Q  313 gttcatgggacattttgcacataagtgcaaaac 345  Q
    ||||||||| |||||||||||||||||||||||    
T  29644903 gttcatggggcattttgcacataagtgcaaaac 29644935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 38450018 - 38449974
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaa 344  Q
    |||||| ||||| ||| | ||||||||||||||||||||||||||    
T  38450018 tataaatttttaagtttaggggacattttgcacataagtgcaaaa 38449974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 44405262 - 44405308
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  44405262 tataaatttttaagttcaggggacattttgcacataagtgcaaaact 44405308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 20189431 - 20189477
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| |||||||||   ||||||||||||||||||||||||||||    
T  20189431 tataaatttttatgtttgggggacattttgcacataagtgcaaaact 20189477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 55481548 - 55481502
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  55481548 tataaattttcaagttcaggggacattttgcacataagtgcaaaact 55481502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 35233948 - 35233904
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaa 344  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||    
T  35233948 tataaattttcaagttcaagggacattttgcacataagtgcaaaa 35233904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 3106955 - 3107001
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||||||    
T  3106955 tataaatttttaagttcatggggcattttgcacataagtgcaaaact 3107001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 36207181 - 36207136
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaac 345  Q
    |||||| ||| | |||||||||||||||| ||||||||||||||||    
T  36207181 tataaattttcaagttcatgggacattttacacataagtgcaaaac 36207136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 10857491 - 10857463
Alignment:
Q  261 ttgtgggtgccacgtcagcgaagtctaag 289  Q
    |||||||||||||||||||||||||||||    
T  10857491 ttgtgggtgccacgtcagcgaagtctaag 10857463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 39957926 - 39957894
Alignment:
Q  231 taatccgagggaaccaatctcatcgcccacttg 263  Q
    ||||||||||||||||||| |||||||||||||    
T  39957926 taatccgagggaaccaatcccatcgcccacttg 39957894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 3272946 - 3272982
Alignment:
Q  231 taatccgagggaaccaatctcatcgcccacttgtggg 267  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3272946 taattcgagggaaccaatctcatcgcccacttgtggg 3272982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 21247424 - 21247470
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||| | ||||||||| ||||||||||||||||||||||||    
T  21247424 tataaattttcaagttcatggggcattttgcacataagtgcaaaact 21247470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 29487480 - 29487447
Alignment:
Q  313 gttcatgggacattttgcacataagtgcaaaact 346  Q
    ||||| ||||||||||||||||||||||||||||    
T  29487480 gttcaggggacattttgcacataagtgcaaaact 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 25630386 - 25630340
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  25630386 tataaattttcaagttcaggggacattttgcacataagtgcaaaact 25630340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 37746495 - 37746462
Alignment:
Q  313 gttcatgggacattttgcacataagtgcaaaact 346  Q
    ||||| ||||||||||||||||||||||||||||    
T  37746495 gttcaagggacattttgcacataagtgcaaaact 37746462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 6138255 - 6138301
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||||||| | ||||||||||||||||||||||||    
T  6138255 tataaatttttaagttcatgaggcattttgcacataagtgcaaaact 6138301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 25404288 - 25404242
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| ||| | ||||||||||||||||||||||||||||    
T  25404288 tataaatttttaagtttaggggacattttgcacataagtgcaaaact 25404242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 34217199 - 34217245
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||||| |||||  |||||||||||||||||||||||||||    
T  34217199 tataaatttttaagttcaacggacattttgcacataagtgcaaaact 34217245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 38424854 - 38424900
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaact 346  Q
    |||||| ||| | ||||||||| ||||||||||||||||||||||||    
T  38424854 tataaattttcaagttcatggggcattttgcacataagtgcaaaact 38424900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 5577271 - 5577315
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaa 344  Q
    |||||| ||| ||||||| ||| ||||||||||||||||||||||    
T  5577271 tataaattttcatgttcagggggcattttgcacataagtgcaaaa 5577315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 38090537 - 38090493
Alignment:
Q  300 tataaacttttatgttcatgggacattttgcacataagtgcaaaa 344  Q
    |||||| ||| | ||| ||||||||||||||||||||||||||||    
T  38090537 tataaattttcaagtttatgggacattttgcacataagtgcaaaa 38090493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University