View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_1 (Length: 491)
Name: NF20215_low_1
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 18113118 - 18113586
Alignment:
| Q |
19 |
cacaattcatcaaatataaaattcgttaaaatatcaacatttgttgtttatttggtctaccaatacaatgctacacatattgttaccgtgtgcaaaggtt |
118 |
Q |
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| T |
18113118 |
cacaattcatcaaatataaaattcgttaaaatatcaacatttgttgtttatttggtctaccaatacaatgctacacatattgttaccgtgtgcaaggttt |
18113217 |
T |
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| Q |
119 |
cttaattaaaaactattgtgactaagttttgggtcacacgttttgtgaaacataaattagcaatttccatc-----------atcgagtcaactcattca |
207 |
Q |
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| T |
18113218 |
cttaattaaaaactattgtgactaagttttgggtcacacgttttgtgaaacataaattagcaatttccatccatcagccatcatcgagtcaactcattca |
18113317 |
T |
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| Q |
208 |
tatgtggcatcatatttaaaaataacgaaaatttgtgcaatnnnnnnnnnnnnnnnnncccctaattaacgagtgaaaattgaacaccaaaatacgaaat |
307 |
Q |
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| T |
18113318 |
tatgtggcatcatatttaaaaataacgaaaatttgtgcaataaaaaaaaacaaaaa--cccctaattaacgagtgaaaattaaacaccaaaatacgaaat |
18113415 |
T |
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| Q |
308 |
ccttattggtgaaaaaactcaagagtgggtcccagttgagtccacgtcatcaaacctttttcagaaaacgccaccgaccaaaccctcccacgttgattct |
407 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18113416 |
ccttattggtgaaaaaactca-gagtgggtcccagttgagtccacgtcatcaaacctttttcagaaaaccccaccgaccaaaccctcccacgttgattct |
18113514 |
T |
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| Q |
408 |
atccccataagacggaatattccaaacttcgttagtccacgttacaaacagtccacattatttatctctctc |
479 |
Q |
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| T |
18113515 |
atccccataagacggaatattccaaacttcgttagtccacgttaccaacagtccacattatttatctctctc |
18113586 |
T |
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