View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_10 (Length: 244)
Name: NF20215_low_10
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_10 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0388 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 115 - 244
Target Start/End: Original strand, 1231117 - 1231246
Alignment:
| Q |
115 |
ttgattttgttattgatttgagaacttaaacaagcattgaatgtatagtgaattttgattcttttcttaagtgtttagttcttgttatcctacttagagc |
214 |
Q |
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| T |
1231117 |
ttgattttgttattgatttgagaacttaaacaagcattgaatgtatagtgaattttgattcttttcttaagtgtttcgttcttgttatcctatttagagc |
1231216 |
T |
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| Q |
215 |
atgtttggattgatttatttgagtttatct |
244 |
Q |
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| T |
1231217 |
atgtttggattgatttatttgagtttatct |
1231246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 1250435 - 1250539
Alignment:
| Q |
139 |
cttaaacaagcattgaatgtatagtgaattttgattcttttcttaagtgtttagttcttgttatcctacttagagcatgtttggattgatttatttgagt |
238 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||||||||| |||| | ||||||||||||||||| ||||||| ||| |
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| T |
1250435 |
cttaaacaagcattgaatgtagagtgaatttcgattcttttttcaagcgtttagttcttgtttacctattaagagcatgtttggattggtttattttagt |
1250534 |
T |
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| Q |
239 |
ttatc |
243 |
Q |
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||||| |
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| T |
1250535 |
ttatc |
1250539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 115 - 244
Target Start/End: Complemental strand, 1432393 - 1432262
Alignment:
| Q |
115 |
ttgattttgttattgat--ttgagaacttaaacaagcattgaatgtatagtgaattttgattcttttcttaagtgtttagttcttgttatcctacttaga |
212 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| ||||||||| ||||||| || |||||| ||| ||||| ||||| |
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| T |
1432393 |
ttgattttgttattgaaagttgagaccttaaacaagcattgaatgtatggtgtattctgattctttgcttaagttttcagttctggttttcctatttaga |
1432294 |
T |
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| Q |
213 |
gcatgtttggattgatttatttgagtttatct |
244 |
Q |
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| T |
1432293 |
gcttgtttggattggtttattttagcttatct |
1432262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 1231048 - 1231094
Alignment:
| Q |
66 |
ttagttacacatcttcagtgtttgattcttgttttccaatctagaag |
112 |
Q |
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| T |
1231048 |
ttagttacacatcttcagtgtttgattcttgttttccaatctagaag |
1231094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 9911802 - 9911830
Alignment:
| Q |
216 |
tgtttggattgatttatttgagtttatct |
244 |
Q |
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| T |
9911802 |
tgtttggattgatttatttgagtttatct |
9911830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0388 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0388
Description:
Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 8746 - 8776
Alignment:
| Q |
214 |
catgtttggattgatttatttgagtttatct |
244 |
Q |
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| T |
8746 |
catgtttggattgatttatttgagtttatct |
8776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 5499101 - 5499134
Alignment:
| Q |
206 |
acttagagcatgtttggattgatttatttgagtt |
239 |
Q |
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| T |
5499101 |
acttagggcatgtttggattgatttatttgagtt |
5499134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 40357079 - 40357051
Alignment:
| Q |
216 |
tgtttggattgatttatttgagtttatct |
244 |
Q |
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| T |
40357079 |
tgtttggattgatttatttgagtttatct |
40357051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 7297690 - 7297662
Alignment:
| Q |
216 |
tgtttggattgatttatttgagtttatct |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
7297690 |
tgtttggattgatttatttgagtttatct |
7297662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 22796806 - 22796778
Alignment:
| Q |
216 |
tgtttggattgatttatttgagtttatct |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22796806 |
tgtttggattgatttatttgagtttatct |
22796778 |
T |
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