View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_12 (Length: 227)
Name: NF20215_low_12
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36205423 - 36205649
Alignment:
| Q |
1 |
aagatttacgagattcagtcaccattgaagtttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcct |
100 |
Q |
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| T |
36205423 |
aagatttacgagattcagtcaccattgaagtttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcct |
36205522 |
T |
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| Q |
101 |
ttgattgcaatcaagttattctttaaagcaaagctggaattcaaaggaagcttcctcagatttgggcatttagctacctcaaaacgttttaaggaaggaa |
200 |
Q |
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| T |
36205523 |
ttgattgcaatcaagttattctttaaagcaaagctggaattcaaaggaagcttcctcagattggggcatttagctacctcaaaacgttttaaggaaggaa |
36205622 |
T |
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| Q |
201 |
aatccaaagctctcttgtggatgctca |
227 |
Q |
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| T |
36205623 |
aatccaaagctctcttgtggatgctca |
36205649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 36230741 - 36230940
Alignment:
| Q |
28 |
aagtttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcctttgattgcaatcaagttattctttaaa |
127 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||||| |||| ||| |
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| T |
36230741 |
aagtttaggacgtagcaaggttggaataattgtgtcatcccactctaaattgtcccaccactctgtctcaccttggattgcaatcaagttaatcttgaaa |
36230840 |
T |
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| Q |
128 |
gcaaagctggaattcaaaggaagcttcctcagatttgggcatttagctacctcaaaacgttttaaggaaggaaaatccaaagctctcttgtggatgctca |
227 |
Q |
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| T |
36230841 |
gcaaacctggaattgaaaggaagcttcctcagattggggcaatcagttaccttaatacgttttagggaaggaaaatccaaagctctcttgtggatgctca |
36230940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 9765246 - 9765441
Alignment:
| Q |
32 |
ttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcctttgattgcaatcaagttattctttaaagcaa |
131 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| ||||| |||| || ||||||| ||||| ||| || |
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| T |
9765246 |
ttaggacgtagtaagcttggaatgattgtgtcatcccactctaaattgtcccaccacttcgttgatccttggattacagtcaagttgttcttggaagtaa |
9765345 |
T |
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| Q |
132 |
agctggaattcaaaggaagcttcctcagatttgggcatttagctacctcaaaacgttttaaggaaggaaaatccaaagctctcttgtggatgctca |
227 |
Q |
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| T |
9765346 |
agctggaattgaaaggaagcttctttagattggggcactcaaataccctaatacgttttagggaaggaaaatccaaagctctcttgtggatgctca |
9765441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 25475604 - 25475406
Alignment:
| Q |
32 |
ttaggacgtagtaaggttggaataattgtgtcatcccactctaatttgtcccaccactccgtctctcctttgattgcaatcaagttattctttaaagcaa |
131 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |||||| || | || |||||||| |||||| |
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| T |
25475604 |
ttaggacgtagtaaggttggaataatattgtcatcccactctaaattgtcccaccacttggtccctccttgaatcaagaccagattattcttggaagcaa |
25475505 |
T |
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| Q |
132 |
agctggaattcaaaggaagcttcctcagatttgggcatttagct---acctcaaaacgttttaaggaaggaaaatccaaagctctcttgtggatgctca |
227 |
Q |
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||| ||||||||||||||||||||||||||| ||||| | | || ||| || |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
25475504 |
agccggaattcaaaggaagcttcctcagattggggcagtgacctttaaccataatacgttttagggaaggaaaattcaaagctctcttgtggatgctca |
25475406 |
T |
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