View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20215_low_4 (Length: 414)
Name: NF20215_low_4
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 34438022 - 34437687
Alignment:
| Q |
18 |
ttatgtacactcaattgagtcactactataaattcattccctctggacaaatttgctcaccccaaaacaatacacatttctctatcttt----gcaagac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34438022 |
ttatgtacactcaattgagtcactactataaattcattccctctggacaaatttgctcaccccaaaacaatacacatttctctatctttctttgcaagac |
34437923 |
T |
|
| Q |
114 |
aacacaacacagccatggttgcctcagtctcagctgttagagctgtcagtggaacaccagtatgttgctttacctacctacttatcaattattcttgttc |
213 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34437922 |
aacacaacccagccatggttgcctcagtctcagctgttagagctgtcagtggaacaccagtatgttgctttacctacctacttttcaattattcttgttc |
34437823 |
T |
|
| Q |
214 |
ttgtgtaattttataaatcatat------atatatnnnnnnnnnnnnntacatac----ttgataaatcattactttataagtgtaatgttacaattgta |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437822 |
ttgtgtaattttataaatcatatatatatatatatacacacacacacacacatacagacttgataaatcattactttataagtgtaatgttacaattgta |
34437723 |
T |
|
| Q |
304 |
tatcaaataatgatttaaatgtttggaatttggatt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437722 |
tatcaaataatgatttaaatgtttggaatttggatt |
34437687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 34437656 - 34437612
Alignment:
| Q |
358 |
ttccaatcaaacaatctagaccgtcctattaagatcgttcatctc |
402 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
34437656 |
ttccaatcaaacaatctagaccgacctattaagatcgtacatctc |
34437612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University