View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_5 (Length: 397)
Name: NF20215_low_5
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 20170978 - 20171359
Alignment:
| Q |
16 |
gagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
115 |
Q |
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| T |
20170978 |
gagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
20171077 |
T |
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| Q |
116 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
215 |
Q |
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| T |
20171078 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
20171177 |
T |
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| Q |
216 |
acatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnnggaacactcaa |
314 |
Q |
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| T |
20171178 |
acatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctc-aaaaaaaggaacactcag |
20171276 |
T |
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| Q |
315 |
ccagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaa |
397 |
Q |
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| T |
20171277 |
ccagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaa |
20171359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 44392688 - 44393069
Alignment:
| Q |
16 |
gagagacaaggagagaaacccatcttggagaaacagaacacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392688 |
gagagacaaggagagaaacccatcttggagaaacagagcacatgcaaatgattcggtggcataagcattctagacacaacagagttgcacgtgtcctgct |
44392787 |
T |
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| Q |
116 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
215 |
Q |
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| T |
44392788 |
tctccaacaaggagttctcagcctatataaaccattacacctcgagtttgatgaaagttgaagtggaagtttaacttgaactgggaaaaatgtgctctat |
44392887 |
T |
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| Q |
216 |
acatcgatgcaattttatagagatat-aggtaggaatgaaattatttaagaaacaatgtgtgcagttaaagttttggtctcnnnnnnnnggaacactcaa |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
44392888 |
acatcgatgcaattttatagagatatgaggtaggaatgaaattatttaagaaacaatgtgtgtagttaaagttttggtctc-aaaaaaaggaacactcag |
44392986 |
T |
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| Q |
315 |
ccagaccatacggcataccatacctcatcatgcaagtactacaatagatgcacnnnnnnntcaaagttgcaatgtataaggaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
44392987 |
ccagaccatacggcataccatacctcatcatgcaagtactacaatacatgcacaaaaaaatcaaagttgcaatgtctaaggaa |
44393069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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