View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_6 (Length: 346)
Name: NF20215_low_6
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 37793402 - 37793697
Alignment:
| Q |
1 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
100 |
Q |
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| T |
37793402 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
37793501 |
T |
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| Q |
101 |
gaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtag |
200 |
Q |
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| T |
37793502 |
gaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaacatgaatactttagttctgtgtacgatgtag |
37793601 |
T |
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| Q |
201 |
aattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatgccatgccatgtagataatactaataatttcatttg |
300 |
Q |
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| T |
37793602 |
aattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatgacatgcc------ataatactaataatttcatttg |
37793695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 37792934 - 37793066
Alignment:
| Q |
1 |
caagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatcaaatggattctcttcaataacaatg |
100 |
Q |
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||||||| ||||||||||||||||| |||| || |||||||||| | |||||| ||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
37792934 |
caagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttcaagtggattctcttgcataacaaca |
37793033 |
T |
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| Q |
101 |
gaaaatgttacttccacaatatcacatgaaaat |
133 |
Q |
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| T |
37793034 |
gaaaatttcgcttccactatatcacatgaaaat |
37793066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 265
Target Start/End: Original strand, 37809559 - 37809655
Alignment:
| Q |
166 |
tgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatg |
265 |
Q |
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||||||||||||||||||| |||| ||||||| |||| |||||||||| || | ||||||| ||||| ||||||||| ||| |||||||||||||||| |
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| T |
37809559 |
tgaacatgaatactttagtcctgtatacgatgcagaactttggagcca---tggaaaataaatcgttactgtaatgtgggggtatactcttttgaaaatg |
37809655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 37793742 - 37793780
Alignment:
| Q |
296 |
atttgaaataaaatagcatttctttctcgcttctatatt |
334 |
Q |
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| T |
37793742 |
atttgaaataaaatagcatttctttctcgcttctatatt |
37793780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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