View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_8 (Length: 318)
Name: NF20215_low_8
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 36205769 - 36206064
Alignment:
| Q |
6 |
aggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgcacacttggcgaagcatgccaagatggcatttgt |
105 |
Q |
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| T |
36205769 |
aggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgcacacttggcgaagcatgccaagatggcatttgt |
36205868 |
T |
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| Q |
106 |
cattaatcgaggaaccatccacaaggctgtctgtgcttgaaagatatatgctttccaaatgattcatttctgacatggatgttaataatgaaaacatttc |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36205869 |
cagtaatcgaggaaccatccacaaggctgtctgtgcttgaaagatatatgctttccaaatgattcatttctgacatggatgttaataatgaaaacatttc |
36205968 |
T |
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| Q |
206 |
aactgacttattgtcctcctttttccaaccagaaatactaatgcgtctagtgcaacctcgtaatttggtggagtgaagtaatctctgcacactagt |
301 |
Q |
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| T |
36205969 |
aactgacttattgtcctcctttttccaaccagaaatactaatgcgtctagtgcaacctcgtaatttggtggagtgaagtaatctctgcacactagt |
36206064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 36231078 - 36231373
Alignment:
| Q |
6 |
aggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgcacacttggcgaagcatgccaagatggcatttgt |
105 |
Q |
| |
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|||| ||| ||||||||||||||| ||||||||||||||||| |||||||| |||| | ||||| |||| ||||||| | ||||||| |||||||| |
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| T |
36231078 |
aggatctcaagaagcggagcatacatcaaccatgtcaaatgatttattgaatgacaactacttatgtgcactcggcgaagatttccaagatcgcatttgt |
36231177 |
T |
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| Q |
106 |
cattaatcgaggaaccatccacaaggctgtctgtgcttgaaagatatatgctttccaaatgattcatttctgacatggatgttaataatgaaaacatttc |
205 |
Q |
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| T |
36231178 |
cagcaatcgatgaaccatccatgaggttgtttctagcccaaagacgtatgctgtccaaatgcctcatttttgacatggattttaataatgaagacatttc |
36231277 |
T |
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| Q |
206 |
aactgacttattgtcctcctttttccaaccagaaatactaatgcgtctagtgcaacctcgtaatttggtggagtgaagtaatctctgcacactagt |
301 |
Q |
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|| ||||| ||||||| || || |||||| | || || ||||| |||| |||||||||||||||| |||| || ||||||||||||||| |
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| T |
36231278 |
aagtgactgtgacccctccttgtttgaaaaagaaatcccaaggcatctagagcaatctcgtaatttggtggattgaaatagtctctgcacactagt |
36231373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 25475268 - 25474973
Alignment:
| Q |
6 |
aggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgcacacttggcgaagcatgccaagatggcatttgt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| |||| || |||||| |
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| T |
25475268 |
aggacctcgagaagcggagcatacctcaaccatgtcaaatgagttattgaacaacaataatgtatgcacacttggcgaagcttgctaagaaggtatttgt |
25475169 |
T |
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| Q |
106 |
cattaatcgaggaaccatccacaaggctgtctgtgcttgaaagatatatgctttccaaatgattcatttctgacatggatgttaataatgaaaacatttc |
205 |
Q |
| |
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|| |||||| |||||||||| |||| || ||| |||||||||||||| |||||||| ||||||| | ||||||||||||||||||| ||||||| |
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| T |
25475168 |
cagcaatcgatgaaccatccataaggtggtgaatgcatgaaagatatatgcggtccaaatgtctcatttccgtcatggatgttaataatgaagacatttc |
25475069 |
T |
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| Q |
206 |
aactgacttattgtcctcctttttccaaccagaaatactaatgcgtctagtgcaacctcgtaatttggtggagtgaagtaatctctgcacactagt |
301 |
Q |
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|| ||| | ||||||||| | || || |||| ||| | ||||| |||| |||||||||||||||||| || |||||||||||||||||| |
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| T |
25475068 |
aagtgagtgtgacccctccttttccaaatcataaatcataaggtatctagagcaatctcgtaatttggtggagtcaaataatctctgcacactagt |
25474973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 9765588 - 9765780
Alignment:
| Q |
15 |
agaagcggagcatacctcaaccatgtcaaatgagttattgaaccacaaaaatttatgcacacttggcgaagcatgccaagatggcatttgtcattaatcg |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| |||| ||||||||||||||| |||| |
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| T |
9765588 |
agaagcggagcatacctcaaccatgtcaaatgagttattgaataacaatgatatatgtgcacttggcgaagcttgcccagatggcatttgtcagcaatca |
9765687 |
T |
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| Q |
115 |
aggaaccatccacaaggctgtctgtgcttgaaagatatatgctttccaaatgattcatttctgacatggatgttaataatgaaaacatttcaa |
207 |
Q |
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| ||| |||||| ||||| | | ||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
9765688 |
atgaagcatccatgaggctttttatgccccaaagatatatgaggtccaaatgcatcatttccgacatggatgttaataatgaagacatttcaa |
9765780 |
T |
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