View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20215_low_9 (Length: 301)
Name: NF20215_low_9
Description: NF20215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20215_low_9 |
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| [»] scaffold0036 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 3083142 - 3083038
Alignment:
| Q |
1 |
caatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccaga |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||| |
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| T |
3083142 |
caatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaaccagctgccttacaaaccaga |
3083043 |
T |
|
| Q |
101 |
agcaa |
105 |
Q |
| |
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||||| |
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| T |
3083042 |
agcaa |
3083038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38403934 - 38403833
Alignment:
| Q |
1 |
caatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccaga |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||||||||||||||| |
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| T |
38403934 |
caatggcagtctcctcattctcagcccctaaatgaataaagca---caccaaaaattggacatcattgtaagtaataaacctgctgccttacaaaccaga |
38403838 |
T |
|
| Q |
101 |
agcaa |
105 |
Q |
| |
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||||| |
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|
| T |
38403837 |
agcaa |
38403833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 99524 - 99423
Alignment:
| Q |
1 |
caatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccaga |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
99524 |
caatggcagtctcctcattctcagcccctaaatgaataaagca---caccaaaaattggacatccttgtaagtaataaacctgctgccttacaaaccaga |
99428 |
T |
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| Q |
101 |
agcaa |
105 |
Q |
| |
|
||||| |
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|
| T |
99427 |
agcaa |
99423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40909891 - 40909811
Alignment:
| Q |
1 |
caatagcagtctcctcattctcagcccctaaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacc |
81 |
Q |
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|||||||||| |||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |
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| T |
40909891 |
caatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaaaaattggacatccttgtaagtaacaaacc |
40909811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 33814092 - 33814017
Alignment:
| Q |
30 |
aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
33814092 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa |
33814017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 33873562 - 33873487
Alignment:
| Q |
30 |
aaatgaataaagcagcacaccaaaatttggacatccttgtaagtagcaaacctgttgccttacaaaccagaagcaa |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
33873562 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaa |
33873487 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 207635 - 207696
Alignment:
| Q |
175 |
catatgttcattttaagcacagatttgtgcatagaaagtacaaatacgatgaagtttaattt |
236 |
Q |
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|||||||||||||||||||||||||| |||||| | |||| | ||| ||||||||||||||| |
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| T |
207635 |
catatgttcattttaagcacagatttctgcatacacagtaaacataagatgaagtttaattt |
207696 |
T |
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