View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20216_high_1 (Length: 830)

Name: NF20216_high_1
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20216_high_1
NF20216_high_1
[»] chr6 (3 HSPs)
chr6 (85-535)||(34432268-34432722)
chr6 (598-815)||(34432002-34432204)
chr6 (21-80)||(34432879-34432938)
[»] chr5 (1 HSPs)
chr5 (45-164)||(9739791-9739909)


Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 85 - 535
Target Start/End: Complemental strand, 34432722 - 34432268
Alignment:
Q  85 gagattacaaagaaccattttagaggaatatgtccctaacaattcgtgttactaatgacaaaagttgactcaatcaaatattatcaatgg-taattcaat 183  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  34432722 gagattacaaagaaccattttaggggaatatgtccctaacaattcgtgttagtaatgacaaaagttaactcaatcaaatactatcaatgggtaattcaat 34432623  T
Q  184 gaattgtcttgggagtgttaaaaacggataatcttcatgtaacatgacctattaagattacatcatcatatactcaatcctttataagtaaatttattga 283  Q
    ||||||| |||||||| || |||| |||||||||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  34432622 gaattgttttgggagtattcaaaatggataatctttatgtaacatgacctattaagattacaccatcggatactcaatcctttataagtaaatttattga 34432523  T
Q  284 aaaacgatgaaaagtgttgaattcaactaatcttacagttgcattaaccaacaaaatataccttgtttactacttttaaaatataaatttcattaaccac 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34432522 aaaatgatgaaaagtgttgaattcaactaatcttacagttgcattaaccaacaaaatataccttgtttactacttttaaaatataaatttcattaaccac 34432423  T
Q  384 tttaattattttattaaccaaaaatgcaaaacattttcaaaattacaatacannnnnnngtggaaaatattacaatacatagattccaaaagtgtttaac 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||    
T  34432422 tttaattattttattaaccaaaaatgcaaaacattttcaaaattacaatacatttttttgaggaaaatattacaatacatagattccaaaagtgtttaac 34432323  T
Q  484 agtagtacca---nnnnnnngttaacaaagcagtaaaaatgattaatgacacgtg 535  Q
    ||||||||||          |||||||||||||||||||||||||||||||||||    
T  34432322 agtagtaccattttttttttgttaacaaagcagtaaaaatgattaatgacacgtg 34432268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 598 - 815
Target Start/End: Complemental strand, 34432204 - 34432002
Alignment:
Q  598 gaagatagttcactacggtgtcgtttttcttataaaaagaggggnnnnnnntatcttccaccattttcccgctaaaaagcagagaatcacgtttctagaa 697  Q
    ||||||||||||||||||||||||||| |||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34432204 gaagatagttcactacggtgtcgttttgcttataaaaa-aggg--aaaaaatatcttccaccattttcccgctaaaaagcagagaatcacgtttctagaa 34432108  T
Q  698 tcttccatcaccgccgtcgtcgccgccgtaatggtaacctgcttcttctcttccgatcatttctcaatgcgcgtttcgattttcaactctatcgtttgaa 797  Q
    ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34432107 tcttcc------------gtcgccgccgtaatggtaacctgcttcttctcttccgatcatttctcaatgcgcatttcgattttcaactctatcgtttgaa 34432020  T
Q  798 tcactaacttcaatttct 815  Q
    ||||||||||||||||||    
T  34432019 tcactaacttcaatttct 34432002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 34432938 - 34432879
Alignment:
Q  21 atgactatatacgaggcttatatttatgattcctaataactctaataaagagtaataatg 80  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34432938 atgaatatatacgaggcttatatttatgattcctaataactctaataaagagtaacaatg 34432879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 9739909 - 9739791
Alignment:
Q  45 tatgattcctaataactctaataaagagtaataatgcacagagattacaaagaaccattttagaggaatatgtccctaacaattcgtgttactaatgaca 144  Q
    |||||| ||||||||  ||||||||||||||||||||||| ||||||  ||||||   |||||   ||||| || |||||| |  ||| || ||||||||    
T  9739909 tatgatacctaataatactaataaagagtaataatgcacaaagatta-gaagaactgatttaggataatatttctctaacactcagtgctagtaatgaca 9739811  T
Q  145 aaagttgactcaatcaaata 164  Q
    |||||| ||| |||||||||    
T  9739810 aaagttaactaaatcaaata 9739791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University