View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_high_15 (Length: 218)
Name: NF20216_high_15
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 37132156 - 37132332
Alignment:
| Q |
19 |
cacagacacaacacttatacgtgacatcagtaaatatttggggaaaaaatgaattaattgaatgcaatcacatggtgcgacaaaggtgtttgcaaattgc |
118 |
Q |
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| T |
37132156 |
cacagacacaacacttatacgtgacaccggtaaatatttggggaaaaaatgaattaattgaatgcaatcacatggtgcgacaaaggtgtttgcaaattgc |
37132255 |
T |
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| Q |
119 |
ttctgagtttgataacctaaagtcattaccaatccaaggtgaacagctaacaattcattttacatagcaattaacta |
195 |
Q |
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| T |
37132256 |
ttctgagtttgataacctaaagtcattaccaatccaaggtgaacagctaacaattcattttacatagcaattaacta |
37132332 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 25335910 - 25335938
Alignment:
| Q |
64 |
aaaatgaattaattgaatgcaatcacatg |
92 |
Q |
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| T |
25335910 |
aaaatgaattaattgaatgcaatcacatg |
25335938 |
T |
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