View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_high_5 (Length: 466)
Name: NF20216_high_5
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Original strand, 31354467 - 31354902
Alignment:
| Q |
14 |
gaagtcggaaggattctcgtgatacaagttgtagcatgataatttttaaatggggaaagaataaaaattcaactcaatcgatttgtttaacgagatttag |
113 |
Q |
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| T |
31354467 |
gaagtcggaaggattcaagtgatacaagttgtagcatgagaatttttaaatggggaaagaataaaaattcaactcaatcgatttgtttaacgagatttag |
31354566 |
T |
|
| Q |
114 |
gaaatgtgtctttacaatatggattctgaccaactacgaaccaagtttgtggaaagggtttgaaaatgagggtgaaagcaatgggtgagatggagaaaga |
213 |
Q |
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| T |
31354567 |
gaaatgtgtctttacaatatggattctgaccaactacgaatcaagtttgtggaaagggtttgaaaatgagggtgaaagcaatgggtaagatggagaaaga |
31354666 |
T |
|
| Q |
214 |
tccatattgttataagctttaatattttgaatggcttaactttgatgttttctactaagaaatatttatagctatggcttaaacttgatcgaaggaaact |
313 |
Q |
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| T |
31354667 |
tccatattgttataagctttaatattttgaatggcttaactttgatgttttctactgagaaatatttatagctatggcttaaacttgatcgaaggaaact |
31354766 |
T |
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| Q |
314 |
atataaagcaaactcatctctcacattcatgctcacatatttcctcaatttccatatagctttcatcggttaagcttaagccaaagctataaatctttct |
413 |
Q |
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| T |
31354767 |
atataaagcaaactcatctctcacattcatgctcacatatttcctcaatttccatatagctttcatcggttaagcttaagccaaagctataaatctttct |
31354866 |
T |
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| Q |
414 |
ctttgtagcaaacatcaaaagaacaccattaaaaat |
449 |
Q |
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| T |
31354867 |
ctttgtagcaaacatcaaaagaacaccattaaaaat |
31354902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 31355057 - 31354941
Alignment:
| Q |
81 |
ttcaactcaatcgatttgtttaacgagatttaggaaatgtgtctttacaatatggattctgaccaactacgaaccaagtttgtggaaa--gggtttgaaa |
178 |
Q |
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| T |
31355057 |
ttcaaatcaatccatttgtttagtgagattcaggaaatgtgt-tttacaatatgaattttgaccaactaaaaatcaattttgttgaaaagggttttgaaa |
31354959 |
T |
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| Q |
179 |
atgagggtgaaagcaatg |
196 |
Q |
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| T |
31354958 |
ataagggtgaaagcaatg |
31354941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 248
Target Start/End: Original strand, 26816626 - 26816793
Alignment:
| Q |
82 |
tcaactcaatcgatttgtttaacgagatttaggaaatgtgtctttacaatatggattctgaccaactacgaaccaagtttgtggaaaggg--tttgaaaa |
179 |
Q |
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| T |
26816626 |
tcaactcaatctatttgtatggtgagattaaggaagtgtgtgtttacagtatgggttttaaccaagtatgaactaagtttgtggaaaaggattgtgaaaa |
26816725 |
T |
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| Q |
180 |
tgagggtgaaagcaatgggtgagatggagaaagatccatattgttataagctttaatattttgaatggc |
248 |
Q |
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| T |
26816726 |
taagggtgagagcaatgggaatgatggaaaatgat-catattgttacagggtttaatgttttaaatggc |
26816793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 34963164 - 34963116
Alignment:
| Q |
172 |
tttgaaaatgagggtgaaagcaatgggtgagatggagaaagatccatat |
220 |
Q |
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| T |
34963164 |
tttgaaaataagtgtgaaagcaatgagtgcgatagagaaagatccatat |
34963116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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