View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_13 (Length: 289)
Name: NF20216_low_13
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 50302571 - 50302679
Alignment:
| Q |
163 |
acagcaacaaaaatctatgtttagcaagtataaactttaacaatatactgctatatctgatatatatttgtttaacataaaaatactcttgacaggaaca |
262 |
Q |
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| T |
50302571 |
acagcaacaaaaatctatgtttagcaagtataaactttaacaatatactgctatatctgatatatatttgtttaacataaaaatactcttgacaggaaca |
50302670 |
T |
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| Q |
263 |
tcagtatat |
271 |
Q |
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| T |
50302671 |
tcagtatat |
50302679 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 50302326 - 50302422
Alignment:
| Q |
11 |
cagagactcttaattaaannnnnnnggtaagaaataaaccaacttgtgccatggatacaatccactaaaatctgtgtaaactgtgtcaatctactga |
107 |
Q |
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| T |
50302326 |
cagagactcttaattaaatttttttggtaagaaataaaccaacttgtgccatggttacaatccactaaaatctgtgtaaactgtgtcaatctactga |
50302422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 6797617 - 6797674
Alignment:
| Q |
37 |
gtaagaaataaaccaacttgtgccatggatacaatccactaaaatctgtgtaaactgt |
94 |
Q |
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| T |
6797617 |
gtaagaaataatcaaacttgtgccatgcttacaatccactgaaatctgtgtaaactgt |
6797674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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