View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_16 (Length: 253)
Name: NF20216_low_16
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15620716 - 15620944
Alignment:
| Q |
1 |
atcacaatgaaaatgaaatctatttacaatagcaattaaatcattgagaatattgattcataactcagccaatttatcttttggatttgattccgttttt |
100 |
Q |
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| T |
15620716 |
atcacaatgaaaatgaaatctaattacaatagcaattaaatcattgagaatattgattcataactcagccaatttatcttttggatttgattccgttttt |
15620815 |
T |
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| Q |
101 |
taacattagtatttacttcatgcagacatatgatgactatctttttagtagactaacaaagtttttcctactagatattggaaggttttgtagtatagaa |
200 |
Q |
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| T |
15620816 |
taacattagtatttacttcatgaaaacatatgatgactatctttttagtagactaacaaagtttttcctactagatattggaaggttttgtagtatagac |
15620915 |
T |
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| Q |
201 |
accnnnnnnngatccggatatgtatactt |
229 |
Q |
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||| ||| ||||||||||||||| |
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| T |
15620916 |
accaaaaaaagatacggatatgtatactt |
15620944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 15685061 - 15685230
Alignment:
| Q |
1 |
atcacaatgaaaatgaaatctatttacaatagcaat---taaatcattgagaatattgattcataactcagccaatttatcttttggatttgattc-cgt |
96 |
Q |
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|||| ||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| | || | ||| | |
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| T |
15685061 |
atcataatgaaaataaattctaattacaatagcaatatttaaatcattgagaatattgattcataactcgaccaattaatccttttgtttcggttcaaat |
15685160 |
T |
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| Q |
97 |
tttttaacattagtatttacttcatgcagacatatgatgactatctttttagtagactaacaaagttttt |
166 |
Q |
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|||| |||||||||||||||||||| | |||||| ||||| |||| ||||||| | ||||||||||||| |
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| T |
15685161 |
ttttaaacattagtatttacttcataaaaacatatcatgaccatctatttagtacattaacaaagttttt |
15685230 |
T |
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