View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_17 (Length: 237)
Name: NF20216_low_17
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30147290 - 30147510
Alignment:
| Q |
1 |
ttgcaaaccctccagcatatggtaagatttacttaaattcagtttctctttcaattttatcagactttgattcacaataatacaataagcagggacggca |
100 |
Q |
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| T |
30147290 |
ttgcaaaccctccagcatatggtaagatttacttaaattcagtttctctttcaattttatcagactttgattcacaataatacaataagcagggacggca |
30147389 |
T |
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| Q |
101 |
ccaagtaaggacttgtgtgtgccatggccctcactttgttttggaaaaataaataaatttaatactttatatgaaattaaagtacaaggagaggataata |
200 |
Q |
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| T |
30147390 |
ccaagtaaggacttgcgtgtgccatggccctcactttgttttggaaaaataaataaatttaatactttatatgaaattaaagtacaaggagaggataata |
30147489 |
T |
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| Q |
201 |
tttgatttaggcccacactat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
30147490 |
tttgatttaggcccacactat |
30147510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 35210014 - 35210117
Alignment:
| Q |
116 |
tgtgtgccatggccctcactttgttttggaaaaataaataaatttaatactttatatgaaattaaagtacaaggagaggataatatttgatttaggccca |
215 |
Q |
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||||||||||| |||||||||||| ||||||| ||||| |||| ||||| | ||||||||||||| ||||||| ||||||||| |||||| || |||| |
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| T |
35210014 |
tgtgtgccatgaacctcactttgttatggaaaa-taaattaatt-aatacatgatatgaaattaaaatacaaggcgaggataatgtttgatcaagtccca |
35210111 |
T |
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| Q |
216 |
cactat |
221 |
Q |
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|||||| |
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| T |
35210112 |
cactat |
35210117 |
T |
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