View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_18 (Length: 236)
Name: NF20216_low_18
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 36284128 - 36283916
Alignment:
| Q |
1 |
atctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactagaaaatgtgagttaaaggtttttaa |
100 |
Q |
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| T |
36284128 |
atctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactagaaaatgtgagttaaaggtttttaa |
36284029 |
T |
|
| Q |
101 |
atataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaa |
200 |
Q |
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| T |
36284028 |
atataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaa |
36283929 |
T |
|
| Q |
201 |
aataacacacaat |
213 |
Q |
| |
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||||| ||||||| |
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| T |
36283928 |
aataagacacaat |
36283916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 34554992 - 34554782
Alignment:
| Q |
1 |
atctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactagaaaatgtgagttaaaggtttttaa |
100 |
Q |
| |
|
||||||||||| ||| |||||| |||||||| |||| || |||||||||||||||||||| |||| | ||||||||||| ||| | || | ||||||| |
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| T |
34554992 |
atctcaagagttaactaaccttgataatctctagaaattctagattggggcatttttctagcaacaactcaactagaaaatatgaatcaaggatttttaa |
34554893 |
T |
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| Q |
101 |
atataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataacaaaagagttatgaaa |
200 |
Q |
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|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| | |
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| T |
34554892 |
atataattgtagatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcacctgcaa-gtggataaaaataac-aaagaattatgaga |
34554795 |
T |
|
| Q |
201 |
aataacacacaat |
213 |
Q |
| |
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||||||| ||||| |
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| T |
34554794 |
aataacatacaat |
34554782 |
T |
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Back To:
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