View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_3 (Length: 531)
Name: NF20216_low_3
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 23 - 513
Target Start/End: Original strand, 279673 - 280163
Alignment:
| Q |
23 |
caacatggttttatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgt |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
279673 |
caacctggttttatacatgaagggaacatctctttaaatcaaggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgt |
279772 |
T |
|
| Q |
123 |
tctttgatatgcaagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279773 |
tctttgatatgcaagaaactggcattgttgggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtc |
279872 |
T |
|
| Q |
223 |
gtacaaagttgggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtacca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279873 |
gtacaaagttgggataaatggtatgactaaaaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtacca |
279972 |
T |
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| Q |
323 |
atgacttggtataagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279973 |
atgacttggtataagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtc |
280072 |
T |
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| Q |
423 |
aaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataa |
513 |
Q |
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| T |
280073 |
aaagtattggaaggtattggcctgcaatgcttgctgaaaataaaggatgcagtgacacatgtgattatagaggagaatataatgctgataa |
280163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 53 - 442
Target Start/End: Original strand, 290148 - 290537
Alignment:
| Q |
53 |
tctttaaatcaaggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttg |
152 |
Q |
| |
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||||| || |||||| |||||||||||||||| |||||||||||| |||| | |||||| ||| || | |||||||| |||||||||| ||||||| |
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| T |
290148 |
tctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttg |
290247 |
T |
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| Q |
153 |
ggggtcctgtaaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaa |
252 |
Q |
| |
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| T |
290248 |
gcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctag |
290347 |
T |
|
| Q |
253 |
aaagttctatgatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacc |
352 |
Q |
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| T |
290348 |
aaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacc |
290447 |
T |
|
| Q |
353 |
cctgatggtacaaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtattgg |
442 |
Q |
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||||| ||| |||||| |||||| |||| |||||||| ||||| | |||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
290448 |
cctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattgg |
290537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 64 - 439
Target Start/End: Original strand, 24531886 - 24532258
Alignment:
| Q |
64 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta |
163 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||||| ||| |
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| T |
24531886 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttgggggtcatgtt |
24531985 |
T |
|
| Q |
164 |
aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg |
263 |
Q |
| |
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|||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
24531986 |
aaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaaagttctatg |
24532085 |
T |
|
| Q |
264 |
atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac |
363 |
Q |
| |
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|||||||| | | |||||||| ||||| | || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || | |
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| T |
24532086 |
atcccaaa---tctaatggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtc |
24532182 |
T |
|
| Q |
364 |
aaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtat |
439 |
Q |
| |
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||||| |||||| |||| |||||||||||||| | |||| |||||||||||||||||||| |||||||||||||| |
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| T |
24532183 |
aaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtat |
24532258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 64 - 439
Target Start/End: Original strand, 24525213 - 24525586
Alignment:
| Q |
64 |
aggtaccaatattataagtttattaagtgttacagttggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttggggg-tcctgt |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | |||||| ||| |||| |||||||| |||||||||| ||||||||||| || ||| |
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| T |
24525213 |
aggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggggggtcatgt |
24525312 |
T |
|
| Q |
163 |
aaaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctat |
262 |
Q |
| |
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|||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
24525313 |
gaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctagaaagttctaa |
24525412 |
T |
|
| Q |
263 |
gatcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggta |
362 |
Q |
| |
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||||||| | | | |||||||| ||||| | || ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | || |
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| T |
24525413 |
gatcccaga---tctaatggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggt |
24525509 |
T |
|
| Q |
363 |
caaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtat |
439 |
Q |
| |
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|||||| |||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
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| T |
24525510 |
caaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaaagtattggaaggtat |
24525586 |
T |
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