View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_4 (Length: 483)
Name: NF20216_low_4
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 55 - 362
Target Start/End: Original strand, 27292682 - 27292989
Alignment:
| Q |
55 |
tggtcaaatcataaatatatgttaactgcagtgtataaaaattgaaacgaatattgacatgatgagacctgagtcaagtcaacagatttgaactgcttga |
154 |
Q |
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| T |
27292682 |
tggtcaaatcataaatatatgttaactgcagtgtataaaaattgaaacgaatattgacatgatgagacctgagtcaagtcaacggatttgaactgcttga |
27292781 |
T |
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| Q |
155 |
acttagacaaaactgggatcaaaccgtggtaaagtctggttcaaggttcaaccggttggtttggttttgaaaacactgatttatagctgtactgaaagca |
254 |
Q |
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| T |
27292782 |
acttagacgaaactgggatcaaaccgtggtaaagtctggttcaaggttcaaccggttggtttggttttgaaaacattgatttatagctgtactgaaagca |
27292881 |
T |
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| Q |
255 |
tcatatgattatttaagaaacaataattgtttccatcaagttgatcatttcatgacaagggacaacatggtaagattatatctgagtcaattgctgatac |
354 |
Q |
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| T |
27292882 |
tcatatgattatttaagaaataataattgtttccatcaagttgatcatttcatgacaagggacaacatggtaagcttatatctgagtcaattgctgatac |
27292981 |
T |
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| Q |
355 |
aataaaac |
362 |
Q |
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| T |
27292982 |
agtaaaac |
27292989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 395 - 468
Target Start/End: Original strand, 27292986 - 27293059
Alignment:
| Q |
395 |
aaacaatctaataatcacttaaagcaatgcttaagtcacataacaaattagtggtgaactagttgtatgataat |
468 |
Q |
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| T |
27292986 |
aaacaatctaataatcacttaaagcaatgcttaagtcacataacaaattagtagtgaactagttgtatgataat |
27293059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 27292569 - 27292611
Alignment:
| Q |
10 |
acatcatcaatatgtcactaaaaccattcaattctgcattaag |
52 |
Q |
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| T |
27292569 |
acatcatcaatatgtcactaaaatcattcaattctgcattaag |
27292611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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