View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_5 (Length: 477)
Name: NF20216_low_5
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 48 - 457
Target Start/End: Complemental strand, 13223611 - 13223202
Alignment:
| Q |
48 |
tgtaccttctcgacggcgtgaagagcggcaccgtgaccaccaacaccagctccaataatgagcaaatcgtaatcgaatgatttaggaggagtgccgttat |
147 |
Q |
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| T |
13223611 |
tgtaccttctcgacggcgtgaagagcggcaccgtgaccaccaacaccagctccaataatgagcaaatcgtaatcgaatgatttaggaggagtgccgttat |
13223512 |
T |
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| Q |
148 |
ttgaaattgcggcggatatggcattgaggtgtgtccggcggaggtggtggttccgtggtgagcaatggctgagggaagtgaaagcgaaggcttcgcgtct |
247 |
Q |
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| T |
13223511 |
ttgaaattgcggcggatatggcattgaggtgtgtcaggcggaggtggtggttgcgtggtgagcgatggctgagggaagtgaaagcgaaggcttcgcgtct |
13223412 |
T |
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| Q |
248 |
gagactacagaaacggagagtgagtgacgtggcagtggtggtggtattgaagagggaacagtggtgtggtcctgaaatggtggtgggggaggagaaagat |
347 |
Q |
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| T |
13223411 |
gagactacagaaacggagagtgagtgacgtggcagtggtggtggtgttgaagagggaacagtggtgtggtcctgaaatggtggtgggggaggagaaagat |
13223312 |
T |
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| Q |
348 |
agtgagattggtgatagcgtcattttgagaggaaattaaatgtgaaagaggtttggagtttggaagttgggagttaggagagggcggacatatccatcca |
447 |
Q |
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| T |
13223311 |
agtgagattggtgatagcgtcattttgagaggaaattaaatgtgagagaggtttggagtttggaagttgggagttaggacagggcggacatatccatcca |
13223212 |
T |
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| Q |
448 |
agtcagtgta |
457 |
Q |
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| T |
13223211 |
agtcagtgta |
13223202 |
T |
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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 50299242 - 50299312
Alignment:
| Q |
51 |
accttctcgacggcgtgaagagcggcaccgtgaccaccaacaccagctccaataatgagcaaatcgtaatc |
121 |
Q |
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| T |
50299242 |
accttctcgacagcgtgaagagcagcaccgtgaccaccaacaccagcaccaataatcaacaaatcataatc |
50299312 |
T |
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