View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_7 (Length: 430)
Name: NF20216_low_7
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 1413406 - 1412999
Alignment:
| Q |
1 |
ctcagagtaatggacctataactcgttattttctcttatctcaaatgaagaaaaacgcagtaacttatagtgtattttattcggatgtcaaatacaacat |
100 |
Q |
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| T |
1413406 |
ctcagagtagtggacctataactcgttattttctcttatctcaaatgaagaaaaacgcagtaacttatagtgtattttattcggatgtcaaatacaacat |
1413307 |
T |
|
| Q |
101 |
caattttgtgtgtcaaaatgatatcttttgtttatttcatatgataaaaatttagatgagggaaaatgctctttgtacttgatcaaggaaaacaatacat |
200 |
Q |
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| T |
1413306 |
caattttgtgtgtcaaaatgatatctcttgtttatttcatatgataaaaatttagatgagggaaaatgctctttgtacttgatcaaggaaaacaatacat |
1413207 |
T |
|
| Q |
201 |
tttttgtataagtttagactagttatgtggtggtgagagttgatacctttaaatttatgtgtatattttgttcagtcaacaaatatttggattttatgtg |
300 |
Q |
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| T |
1413206 |
tttttgtataagtttagactagttatgtggtggtgagagttgatacctttaaatttatgtgtatattttgttcagtcaacaaatatttggattttctgtg |
1413107 |
T |
|
| Q |
301 |
tttcctaatctctattttgaggccagaaataagatacccatca---gcgttaaacattttctacaacctcttcgactgaacaatttcctcaaaacaaaac |
397 |
Q |
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| T |
1413106 |
tttcctaatctctattttgaggccagaaataaggtacccatcagcggcgttaaacattttctacaacctctttgactgaataatttcctcaaaacaaaac |
1413007 |
T |
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| Q |
398 |
ctctcacc |
405 |
Q |
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| T |
1413006 |
ctctcacc |
1412999 |
T |
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