View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_8 (Length: 416)
Name: NF20216_low_8
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 41078584 - 41078181
Alignment:
| Q |
18 |
acaaattctcatcctgcaatgtatggatggttagttttgtgagacaaatcaaatataggtttcatcttattattgcactcaaannnnnnnnnnnnggtta |
117 |
Q |
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| T |
41078584 |
acaaattgtcatcctgcaatgtatggatggttagttttgtgagacaaatcaaatataggtttcatcttattattgcactcaaatttttcttttttggtta |
41078485 |
T |
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| Q |
118 |
aactatgctacgctaaatatatatttttcctggttgtagatatggtattctatatgaattatgactttcactaaactatttggatcctattggagaagca |
217 |
Q |
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| T |
41078484 |
aactatgctacgctaaatatatatttttcctggttgtagatatggtattctatatgaattttgactttcactaaactatttggatcctattggagaagca |
41078385 |
T |
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| Q |
218 |
gagaataggaacannnnnnnctgttgtatttcagttacctagct-----gaggtccatcattgataaattaaacttaataaacagttcgcttggctttca |
312 |
Q |
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| T |
41078384 |
gagaataggaacatttttttctgttgtatttcagttacctagcttagctgaggtccatcattgataaattaaacttaataaacagtttgcttggctttca |
41078285 |
T |
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| Q |
313 |
aaatgccttaaacaaatatagtgatgaattaagcttaaaagtttgcttgttgttgcacccaaaaaatgagtaaattagatagtgtatcagttgtttgttt |
412 |
Q |
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| T |
41078284 |
aaatgccttaaacaaatatagtgatgaattaagcttaaaagtttgcttgttattgcacccaaaaaatgagtaaattagatagtgtatcagttgtttgttt |
41078185 |
T |
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| Q |
413 |
gctc |
416 |
Q |
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| T |
41078184 |
gctc |
41078181 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 45044255 - 45044302
Alignment:
| Q |
26 |
tcatcctgcaatgtatggatggttagttttgtgagacaaatcaaatat |
73 |
Q |
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| T |
45044255 |
tcatcatgcaatgtatggatgataagttttgtgagataaatcaaatat |
45044302 |
T |
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