View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20216_low_9 (Length: 406)
Name: NF20216_low_9
Description: NF20216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20216_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 35701154 - 35700934
Alignment:
| Q |
21 |
atggagtgcaccaagatcaatataatactgggcaatccactcttgaataatcttgacttctttatttcgctgttcaatcaaccattttggatcactttct |
120 |
Q |
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| T |
35701154 |
atggagtgcaccaagatcaatataatactgggcaatccactcttgaataatcttgacttctttatttcgctgttcaatcaaccattttggatcactttct |
35701055 |
T |
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| Q |
121 |
tttgaagatagaatatccaaacaatgggatcctgcaatagaattaatgtctatcaaatacacacacatatgtatagaataaatcact----atatttaat |
216 |
Q |
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| T |
35701054 |
tttgaaggtagaatatccaaacaatgggatcctgcaatagaattaatgtctatcaaatacacacacatatgtatagaataaatcactatatatatttaat |
35700955 |
T |
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| Q |
217 |
ctttaaaataaatttttcgtt |
237 |
Q |
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| T |
35700954 |
ctttaaaataaatttttcgtt |
35700934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 35700682 - 35700621
Alignment:
| Q |
242 |
aaaaagcatcaattctccataaaaagaagagctaggaaaaacagaacgaaggacaaaatgaa |
303 |
Q |
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| T |
35700682 |
aaaaagcatcaattctctataaaaagaagagctaggaaaaacagaacgaaggacataatgaa |
35700621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 35700541 - 35700488
Alignment:
| Q |
339 |
attatgacgtccgacttaatgattttaacatttttatcagttaagttagaatta |
392 |
Q |
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| T |
35700541 |
attatgacgttcaacttaatgattttaacatttttatcagttaagttaaaatta |
35700488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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