View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20217_low_10 (Length: 234)
Name: NF20217_low_10
Description: NF20217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20217_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 36346301 - 36346193
Alignment:
| Q |
110 |
aactcaccataataattagagtcttcgacatcaaatatctcaaacaaagttttttaaatttgatattattttaatcctttagtcaacgcaggatatcgac |
209 |
Q |
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| T |
36346301 |
aactcaccataataattagagtcttcgacatcaaatatcccatacaaagtcttttagatttgatattattttaatcctctagtcaacgcaagatatcgac |
36346202 |
T |
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| Q |
210 |
atcaaatat |
218 |
Q |
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||||||||| |
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| T |
36346201 |
atcaaatat |
36346193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 36346135 - 36346063
Alignment:
| Q |
134 |
tcgacatcaaatatctcaaacaaagttttttaaatttgatattattttaatcctttagtcaacgcaggatatc |
206 |
Q |
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| T |
36346135 |
tcgacatcaaatatctcatacaaaattttttaaatttgatattattttaatcctctagtcaacggaggatatc |
36346063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 36346206 - 36346122
Alignment:
| Q |
134 |
tcgacatcaaatatctcaaacaaagttttttaaatttgatattattttaatcctttagtcaacgcaggatatcgacatcaaatat |
218 |
Q |
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| T |
36346206 |
tcgacatcaaatatcccatataaagtcttttgaatttgatattattttaatcctctaatcaacgcaagatatcgacatcaaatat |
36346122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 36346395 - 36346337
Alignment:
| Q |
15 |
aatatatcgaataaatggagattattatgatcacatgataaattattaagtttaattata |
74 |
Q |
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| T |
36346395 |
aatatatcgaataaatggagattattatgatcacatgataaatta-taaatttaattata |
36346337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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