View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20217_low_2 (Length: 337)
Name: NF20217_low_2
Description: NF20217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20217_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 201 - 320
Target Start/End: Original strand, 47759604 - 47759723
Alignment:
| Q |
201 |
acatacccgaacccaagaacgatagagatcggtttcatcaaaaccaataacttcttcaacaaagtaacgagtaggactgaacctacctctctctctaaga |
300 |
Q |
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| T |
47759604 |
acatacccgaacccaagaacgatagagatcggtttcatcaaaaccaataacttcttcaacaaagtaacgagtaggactgaacctacctctctctctaaga |
47759703 |
T |
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| Q |
301 |
agaagagaggatttagcatc |
320 |
Q |
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| T |
47759704 |
agaagagaggatttagcatc |
47759723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 47759424 - 47759538
Alignment:
| Q |
21 |
tgaagaaactgaacctgcttcttctgacgagcaaggttccaaattctccaacacatgttttccaatctagtattcctctcttgaggacttctcgatgaag |
120 |
Q |
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| T |
47759424 |
tgaagaaactgaacctgcttcttctgacgagcaaggttccaaattctccaacacatgttttccaatctagtgttcctctcttgaggacttctcgatgaag |
47759523 |
T |
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| Q |
121 |
aagcctagtaacaac |
135 |
Q |
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| T |
47759524 |
aagcctagtaacaac |
47759538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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