View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20217_low_3 (Length: 315)

Name: NF20217_low_3
Description: NF20217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20217_low_3
NF20217_low_3
[»] chr7 (1 HSPs)
chr7 (1-296)||(33752715-33753010)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 33753010 - 33752715
Alignment:
Q  1 tatgtactagtttatttgactgaaaatatcaatgaaaaatttaaagctagaaaattattatatgctttcctggattgtatgagcatgagaaatagctcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33753010 tatgtactagtttatttgactgaaaatatcaatgaaaaatttaaagctagaaaattattatatgctttcctggattgtatgagcatgagaaatagctcct 33752911  T
Q  101 gagctggcttccaaaatctgagagccacccaatacaccgtcttttccttcttcattaggcttcttggtagctaatgtagcccggataggacttttcgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33752910 gagctggcttccaaaatctgagagccacccaatacaccgtcttttccttcttcattaggcttcttggtagctaatgtagcccggataggacttttcgaga 33752811  T
Q  201 ccgcatctgtgacatcagttctaatcgtttttcgaaccggaacacacttgtctgttttgtcttcatctacgaaaactgtatctctactgtgctttc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33752810 ccgcatctgtgacatcagttctaatcgtttttcgaaccggaacacacttgtctgttttgtcttcatctacgaaaactgtatctctactgtgctttc 33752715  T

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