View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20217_low_4 (Length: 288)
Name: NF20217_low_4
Description: NF20217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20217_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 13504158 - 13504057
Alignment:
| Q |
31 |
tcaacacatattttcgtaattatagcggttcatgccccgtgtgaaaatcaatggaataacta--acgaccatataactataaggtaattatacattcttg |
128 |
Q |
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| T |
13504158 |
tcaacacatattttcgtaattatagcggttcatgtcccgtgtgaaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttg |
13504059 |
T |
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| Q |
129 |
tc |
130 |
Q |
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|| |
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| T |
13504058 |
tc |
13504057 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 13503997 - 13503919
Alignment:
| Q |
190 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttca |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttca |
13503919 |
T |
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