View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20217_low_5 (Length: 271)
Name: NF20217_low_5
Description: NF20217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20217_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 33157720 - 33157931
Alignment:
| Q |
40 |
tcatttaagcataactgagggtagtgccttttttcctaaaatatattacagtgatatgtgaattgctttttaacaagannnnnnncactggaaaggatta |
139 |
Q |
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| T |
33157720 |
tcatttacgcataactgagggtagtgccttttttcctaaaatatattacagtgatatgtgaattgctttttaacaagattttttccactggaaaggatta |
33157819 |
T |
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| Q |
140 |
aatcgatagaagtaaagactnnnnnnnnntctaattagttgggttctgtaaaaatcttgaatcgaaaaacaaaagaggagaaagcaatgtgatgtaattg |
239 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33157820 |
aatcgatagaagtaaagactaaaaaaaaatctaattagttgggttctgtaaaaatcttgaatcgaaaaacaaaagaggagaaagcaatgtgatgtaattg |
33157919 |
T |
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| Q |
240 |
ttgatggtccaa |
251 |
Q |
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| T |
33157920 |
ttgatggtccaa |
33157931 |
T |
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