View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_high_10 (Length: 370)
Name: NF20218_high_10
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 46738432 - 46738758
Alignment:
| Q |
18 |
ataatcgtttatagaattaacataaaactaatgataaatgaacccgtgtgagcgtcacatcagccgattgagtaaacaatgttggttaccatccagagaa |
117 |
Q |
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| T |
46738432 |
ataatcgtttatagaattaacataaaactaatgataaatgaactcgtgtgagcgtcacatcagccgattgagtaaacaatgttggttaccatccagagaa |
46738531 |
T |
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| Q |
118 |
ggatatcggcatgacaaagttgctctggtgatagtagttcaaatgttgaaagattttgggtgaagtgaatgtctaactgagcaaattgtcttctgaagta |
217 |
Q |
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| T |
46738532 |
ggatatcggcatgacaaagttgctccggtgatagtagttcaaatgttgaaagattttgggtgaagtgaatgtctaactgagcaaattgtcttctgaagta |
46738631 |
T |
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| Q |
218 |
tgttgtatattgataattcaacccttgaatttggaaagaacaactacatgagaagataatggtctgtatgtataatctggctagcatgccaatggtttca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46738632 |
tgttgtatattgataattcaacccttgaatttggaaagaacaactacatgagaagataatggtctgtatgtataatctggctagc-----------ttca |
46738720 |
T |
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| Q |
318 |
tttttcggtggattgtttaaagacttatcgtagaatta |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
46738721 |
tttttcggtggattgtttaaagacttatcgtagaatta |
46738758 |
T |
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