View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20218_high_11 (Length: 360)
Name: NF20218_high_11
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 26880754 - 26880547
Alignment:
| Q |
24 |
atgtggcaatggagtgcgatgctttgctaaatttgtttctcagcttgagagtttatatgggaggcataggtatgttcatttccataaactcttaccatct |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880754 |
atgtggcaatggagtgcgatgctttgctaaatttgtttctcagcttgagagtttataggggaggcataggtatgttcatttccataaactcttaccatct |
26880655 |
T |
|
| Q |
124 |
taatttttatgtcttgttgcttgcggtgttgtgtttttagggcaagttttttccgaagcatttaattttcactgatgaaagttttgtattttgatgatac |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26880654 |
taattttcatgtcttgttgcttgcggtgttgtgtttttagggcaagttttttccgaagcatttaattttcactgataaaagttttgtattttgatgataa |
26880555 |
T |
|
| Q |
224 |
cagtaatg |
231 |
Q |
| |
|
|||||||| |
|
|
| T |
26880554 |
cagtaatg |
26880547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 26880546 - 26880465
Alignment:
| Q |
279 |
cagtcattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccatcagcatggtgtttcct |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26880546 |
cagtcattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccatcagcatggtgtttcct |
26880465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 40251848 - 40251754
Alignment:
| Q |
10 |
ctttgtcctttgatatgtggcaatggagtgcgatgctttgctaaatttgtttctcagcttgagagtttatatgggaggcataggtatgttcattt |
104 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
40251848 |
ctttttccttagatgtgtggcaatggagtgcgatgctttgccaaatttgtttctcagcttgagagtttacatgggaggcacaggtttgttcattt |
40251754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 40250245 - 40250196
Alignment:
| Q |
295 |
tcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccat |
344 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| ||||||||||| |
|
|
| T |
40250245 |
tcttgaaatttcgtcttacattatattttcatattttgcagtttcaccat |
40250196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 40707502 - 40707441
Alignment:
| Q |
283 |
cattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccat |
344 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40707502 |
cattatagatattcttaaaattctgtcttacattatattttcatactttgtagtttcaccat |
40707441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University