View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20218_high_12 (Length: 359)
Name: NF20218_high_12
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_12 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 6066778 - 6067121
Alignment:
| Q |
16 |
ctgatgaagcagatgaacaaaaccttagtctcatcaatgagaggaaacacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6066778 |
ctgatgaagcagatgaacaaaaccttagtctcatcaatgagaggaaacacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaa |
6066877 |
T |
|
| Q |
116 |
gcagaaacaccttgatgagctttggtcacaagttctttggctaaggaatgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6066878 |
gcagaaacaccttgatgagctttggtcacaagttctttggctaaggaatgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgat |
6066977 |
T |
|
| Q |
216 |
caagttgttcaagagaatgctcagcttaaagaagaagctttggaacttcggcaaatgataaaagatatgcagattcatagtcctttaatcccttctctta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6066978 |
caagttgttcaagagaatgctcagcttaaagaagaagctttggaacttcgacaaatgataaaagatatgcagattcatagtcctttaatcccttctttta |
6067077 |
T |
|
| Q |
316 |
gtcctttggatgatacatagcttagagatgattcttcaaacaat |
359 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6067078 |
gtcctttggatgatacatatcttagagatgattcttcaaacaat |
6067121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 5744777 - 5745028
Alignment:
| Q |
21 |
gaagcagatgaacaaaaccttagtctcatcaatgagaggaaacacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcaga |
120 |
Q |
| |
|
||||| || ||||||||||| |||| ||||| || || ||||| |||| ||| |||| ||||| || ||||| || || || || |||||||| || | |
|
|
| T |
5744777 |
gaagcggacgaacaaaacctaggtctaatcaacgaaagaaaacatcgaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaa |
5744876 |
T |
|
| Q |
121 |
aacaccttgatgagctttggtcacaagttctttggctaaggaatgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagt |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| || || ||| || | | ||||| ||||||| |||| |
|
|
| T |
5744877 |
aacagcttgatgagctttggtcacaagttgtttggctaaggaatgaaaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagt |
5744976 |
T |
|
| Q |
221 |
tgttcaagagaatgctcagcttaaagaagaagctttggaacttcggcaaatg |
272 |
Q |
| |
|
||| |||||||||| ||| | |||||| |||||| ||||||||| |||||| |
|
|
| T |
5744977 |
tgtccaagagaatgttcaattgaaagaacaagcttcggaacttcgacaaatg |
5745028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University