View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_high_13 (Length: 340)
Name: NF20218_high_13
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 40754832 - 40755145
Alignment:
| Q |
19 |
agggcgacacgtagagggacaaaatctaaatgtaggtttacatgtaggttttgtgaagaaaaagctgcatcctaaccctaaaagggaacttagttgctca |
118 |
Q |
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| T |
40754832 |
agggcgtcacgtagagggacaaaacctaaatgtaggtttacatgtaggttttgtgaagaaaaagttgcatcctaaccctaaaagggaacttagttgctca |
40754931 |
T |
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| Q |
119 |
ttattataaacaaaataaaggagaaaaatagaaactctagagaagatcaaatttactccaaaatttagaacaccttacttcaaccccaagaactcccata |
218 |
Q |
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| T |
40754932 |
ttattataaacaaaataaaggagaaaaatagaaactctaaagaagatcaaatttacttcaaaatttagaacaccttacttcaaccccaagaactcctata |
40755031 |
T |
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| Q |
219 |
gtctcatctgtttcaacctctaatatgatttttcagttcagttacatgtgcagcacacggtttcacgcacgcaagcctcccttcaatttcatgtttgatc |
318 |
Q |
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| T |
40755032 |
gtctcatctgtttcaacctctaatatgatttttcagttcagttacatgtgcaacacactgtttcacgcacgcaagcctcccttcaatttcatgtttgatc |
40755131 |
T |
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| Q |
319 |
tctttttatattct |
332 |
Q |
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|||||||||||||| |
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| T |
40755132 |
tctttttatattct |
40755145 |
T |
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