View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20218_high_14 (Length: 308)

Name: NF20218_high_14
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20218_high_14
NF20218_high_14
[»] chr3 (1 HSPs)
chr3 (1-290)||(32554151-32554440)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 32554440 - 32554151
Alignment:
Q  1 agtccccatagcattaacattcatcaaatcagtaagagtagtaaaatacctagcagcaatattattcaaactatccaacggctgaacaacatacgacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32554440 agtccccatagcattaacattcatcaaatcagtaagagtagtaaaatacctagcagcaatattattcaaactatccaacggctgaacaacataagacatg 32554341  T
Q  101 taaatcgcgggcaacccattatcagaaccattaaaacaagtacaaggaagaggaacaacaaggttctgaccaacatcaagaacattcggatccgtaacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32554340 taaatcgcgggcaacccattatcagaaccattaaaacaagtacaaggaagaggaacaacaaggttctgaccaacatcaagaacattcggatccgtaacag 32554241  T
Q  201 agttagcttctctaagctgatcagaagaaaccaaaccaccgtaaatggaatcagcaatagatgaaagagtgtcagaaggacggattttgt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32554240 agttagcttctctaagctgatcagaagaaaccaaaccaccgtaaatggaatcagcaatagatgaaagagtgtcagaaggacggattttgt 32554151  T

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