View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_high_18 (Length: 256)
Name: NF20218_high_18
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 14630782 - 14631000
Alignment:
| Q |
18 |
attttaacatttgaacttatgcttaacacaatctattacacaactggatattataaacaacatgatacataggtttttgataaattaaaagagaatgtgc |
117 |
Q |
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| T |
14630782 |
attttaacatttgaacttatgcttaacacaatctgttacacaactggatattataaaca-catgatacataggtttctgataaattaaaagagaatgtgc |
14630880 |
T |
|
| Q |
118 |
aattcaaatcatannnnnnngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttggct |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14630881 |
aattcaaatcatatttttgtgtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctcggttggaatgttggct |
14630980 |
T |
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| Q |
218 |
tcttgcttatcacgttgcat |
237 |
Q |
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|||||||||||||||||||| |
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| T |
14630981 |
tcttgcttatcacgttgcat |
14631000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 16641376 - 16641595
Alignment:
| Q |
18 |
attttaacatttgaacttatgcttaacacaatctattacacaactggatattataaacaacatgatacataggtttttgataaattaaaagagaatgtgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
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| T |
16641376 |
attttaacatttgaacttatgcttaacacaatctgttacacaactggatattataaacaacatgatacataggtctttgataagttaaaagagaatatgc |
16641475 |
T |
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| Q |
118 |
aattcaaatcatannnnnnngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttggct |
217 |
Q |
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| T |
16641476 |
aatttaaatcgtatttttctgtaggcatgtttcttacattttcttcacagtctttttccggttctctttgattttccatctctcggttggaatgttggct |
16641575 |
T |
|
| Q |
218 |
tcttgcttatcacgttgcat |
237 |
Q |
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| T |
16641576 |
tcctgcttatcacgttgcat |
16641595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 16632421 - 16632510
Alignment:
| Q |
148 |
ttcttacattttcttcacaacccttttccggttctctttgattttccatctctaggttggaatgttggcttcttgcttatcacgttgcat |
237 |
Q |
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| T |
16632421 |
ttcttacattttcttcataaccctgttccggttctctttgattttccatctctcggttggaatgttggcttcttgcttatcacgttgcat |
16632510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 38881183 - 38881224
Alignment:
| Q |
18 |
attttaacatttgaacttatgcttaacacaatctattacaca |
59 |
Q |
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|||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
38881183 |
atttcaacatttggacttatgcttaacacaatctgttacaca |
38881224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 38881224 - 38881353
Alignment:
| Q |
97 |
ataaattaaaagagaatgtgcaattcaaatcatannnnnnngtagtcatgtttcttacattttcttcacaacccttttccggttctctttgattttccat |
196 |
Q |
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||||| ||||||| |||| |||||||||||||| |||| ||||||||||||| ||| |||||| ||||||||| |||||| |||||||| |
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| T |
38881224 |
ataaactaaaagaaaatgcacaattcaaatcatatttttgtgtaggcatgtttcttacacgttcatcacaatccttttccgaaactctttcgttttccat |
38881323 |
T |
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| Q |
197 |
ctctaggttggaatgttggcttcttgctta |
226 |
Q |
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|||| ||| | |||||||| |||||||| |
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| T |
38881324 |
ctctcggtcgcgatgttggcaacttgctta |
38881353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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