View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20218_high_19 (Length: 252)

Name: NF20218_high_19
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20218_high_19
NF20218_high_19
[»] chr6 (4 HSPs)
chr6 (16-241)||(15399088-15399313)
chr6 (16-241)||(15410875-15411100)
chr6 (66-138)||(7818296-7818368)
chr6 (66-138)||(14435676-14435748)
[»] scaffold1089 (1 HSPs)
scaffold1089 (66-138)||(702-774)
[»] chr4 (1 HSPs)
chr4 (66-135)||(14018623-14018692)
[»] chr5 (2 HSPs)
chr5 (66-129)||(24005042-24005105)
chr5 (66-130)||(25614278-25614342)
[»] chr1 (1 HSPs)
chr1 (66-138)||(37996673-37996745)
[»] chr7 (1 HSPs)
chr7 (71-138)||(19316686-19316753)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 15399313 - 15399088
Alignment:
Q  16 atattgcacataacgaatattatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgataat 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15399313 atattgcacataacgaatatcatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgataat 15399214  T
Q  116 gggcatttccattccttggatgatgtggtcttcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgnnnnnnnnncgaacaaatatacta 215  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  15399213 gggcatgtccattccttggtcgatgtggtcctcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgaaaaaaaaacgaacaaatatacta 15399114  T
Q  216 ctcaactattggcttcttcaacaaaa 241  Q
    ||||||||||||||||||||||||||    
T  15399113 ctcaactattggcttcttcaacaaaa 15399088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 15411100 - 15410875
Alignment:
Q  16 atattgcacataacgaatattatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgataat 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15411100 atattgcacataacgaatatcatttgcccaatctgttaagcttgaagttgaaatagtacatgatttgagatgatacgaaacacattcaagaaccgataat 15411001  T
Q  116 gggcatttccattccttggatgatgtggtcttcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgnnnnnnnnncgaacaaatatacta 215  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  15411000 gggcatgtccattccttggtcgatgtggtcctcgaaaactgttaaagggatgaaaataacatttaaaaaatattcgaaaaaaaaacgaacaaatatacta 15410901  T
Q  216 ctcaactattggcttcttcaacaaaa 241  Q
    ||||||||||||||||||||||||||    
T  15410900 ctcaactattggcttcttcaacaaaa 15410875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 7818368 - 7818296
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga 138  Q
    ||||||||||||||||||| | | |||||||||||||||||||| | | | || |||||||||||||||||||    
T  7818368 aaatagtacatgatttgaggttagacgaaacacattcaagaaccaaaatttggtatttccattccttggatga 7818296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 14435676 - 14435748
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga 138  Q
    |||| ||||||||| |||| ||| ||||||||||||||| ||||||   ||| ||||||||||||||||||||    
T  14435676 aaattgtacatgatctgaggtgagacgaaacacattcaataaccgaatttggccatttccattccttggatga 14435748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 702 - 774
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga 138  Q
    |||| ||||||||| |||| ||| ||||||||||||||||||||||   ||| ||||||||||||||||||||    
T  702 aaattgtacatgatctgaggtgagacgaaacacattcaagaaccgaatttggccatttccattccttggatga 774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 14018692 - 14018623
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttgga 135  Q
    |||||||||||||| | |||||| |||||||||||||||||   || | |||||||||||||||||||||    
T  14018692 aaatagtacatgatctaagatgagacgaaacacattcaagatttgaaattgggcatttccattccttgga 14018623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 24005042 - 24005105
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattc 129  Q
    |||||||||||||| |||| ||| | |||||||||||| ||||||| | |||||||||||||||    
T  24005042 aaatagtacatgatctgaggtgagaagaaacacattcaggaaccgaaattgggcatttccattc 24005105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 25614342 - 25614278
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattcc 130  Q
    |||||||||||||  |||| ||| |||||| |||||||||| || | | ||||||||||||||||    
T  25614342 aaatagtacatgacctgaggtgacacgaaatacattcaagagccaaaattgggcatttccattcc 25614278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 37996673 - 37996745
Alignment:
Q  66 aaatagtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga 138  Q
    |||||||||||||| | || ||| |||||| ||| |||||||| |  | ||||||||||||||||||||||||    
T  37996673 aaatagtacatgatcttaggtgagacgaaatacactcaagaactgcaactgggcatttccattccttggatga 37996745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 19316686 - 19316753
Alignment:
Q  71 gtacatgatttgagatgatacgaaacacattcaagaaccgataatgggcatttccattccttggatga 138  Q
    ||||||||| | || ||| | ||||||||||||||||| || | |||||||||||||||||| |||||    
T  19316686 gtacatgatctaaggtgagatgaaacacattcaagaactgaaattgggcatttccattccttagatga 19316753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University