View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20218_high_2 (Length: 588)
Name: NF20218_high_2
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Complemental strand, 31628835 - 31628310
Alignment:
| Q |
19 |
atgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaagctctttatcaaattctgagatca |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||| |
|
|
| T |
31628835 |
atgaaacatgtgcaaagaattcaagaggaccctccattatacagaaccatatattatggccatcataattgcaaaacctctttattaaattcagagatca |
31628736 |
T |
|
| Q |
119 |
ctttattggaacctaataatacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgt |
218 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31628735 |
cattattggaacctaatagtacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgt |
31628636 |
T |
|
| Q |
219 |
accaacaaaacaagagcctatagatgctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactat |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||| |||||||||||||| | |||||| |
|
|
| T |
31628635 |
accaacaaaacaagagtctatagatgctattaatccctatcataatcaaattgctcaggaccaattaacatcatcagataaccctctctcgagagactat |
31628536 |
T |
|
| Q |
319 |
aaacttgaatttgattatttgacgcatgatactatgctatcatccaccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgt |
418 |
Q |
| |
|
|| ||||||||||||||| | | ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||| ||||| || |
|
|
| T |
31628535 |
aagcttgaatttgattatgtcaggcatgctactatgctatcatccaccaaatcggttccatttaatgatggattttagtcacctaaattagataagttgt |
31628436 |
T |
|
| Q |
419 |
gtatggtgatttaaggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttcaattacatttgaatttgattatgtaaaaag |
518 |
Q |
| |
|
|||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
31628435 |
gtatggtgatataaggaat--ttgttaattgttaagaaaatatgcaatttattctctaaagttgtcttt-aattacatttgaacttgattatgtaaaaag |
31628339 |
T |
|
| Q |
519 |
ttaa-taatgccttgtaatttaaagataa |
546 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
31628338 |
ttaattaatgccttgtaatttaaagataa |
31628310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 561
Target Start/End: Original strand, 31678556 - 31679087
Alignment:
| Q |
19 |
atgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaagctctttatcaaattctgagatca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31678556 |
atgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaatctctttatcaaattctgagatca |
31678655 |
T |
|
| Q |
119 |
ctttattggaacctaataatacttcttctatgttccttagcttcaatgacagcctccaaatcaaagaacaatatcctgcattttcatcaccactttctgt |
218 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31678656 |
cattattggaacctaataatacttcatctatgtttcttagcttcaatgacaacctccaaatcaaagaacaatatcctgcattttcatcaccactttctgt |
31678755 |
T |
|
| Q |
219 |
accaacaaaacaagagcctatagatgctattaatccctatcataatcacattgctcacaacctattaatctcatctgataaccctctctcatgtgactat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
31678756 |
accaacaaaacaagagcctatagatgctattaatccctatcat---------------aaccaattaacatcatcagactaccctttctcatgtgactat |
31678840 |
T |
|
| Q |
319 |
aaacttgaatttgattatttgacgcatgatactatgctatcatccaccaaatctgttccatttcatgatggattttagtgacctaaattaggtaagtcgt |
418 |
Q |
| |
|
||||||||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
31678841 |
aaacttgaatttgataatttcaggcatgctactatgctatcatccaccaaatctgttccatttcatgatggtttttagtgacctaaattaggtaagtctt |
31678940 |
T |
|
| Q |
419 |
gtatggtgatttaaggaatacatgtcgattgttaagaaaatattcaatttattctctaaagttgtctttcaattaca-------tttgaatttgattatg |
511 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| |||||| |||||||||||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
31678941 |
gtatggtgatttaaggaat--atgtcagttgttaag-aaatatgcaatttattctctaaaattgtctttcaattgcatttgaattttgaatttgattatg |
31679037 |
T |
|
| Q |
512 |
taaaaagttaataatgccttgtaatttaaagataaattgttctgtttcat |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31679038 |
taaaaagttaataatgccttgtaatttaaagataaattgttatgtttcat |
31679087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 31657182 - 31657265
Alignment:
| Q |
17 |
caatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaagctctt |
100 |
Q |
| |
|
|||| |||||||| || |||||||||||| ||||||| || ||| | || | |||||||| |||||| | |||||||||||||| |
|
|
| T |
31657182 |
caatcaaacatgttcaaagaattcaagagaaccctcctttgtaccggactacatattatgaccatcacacttgcaaaagctctt |
31657265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University