View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_high_3 (Length: 489)
Name: NF20218_high_3
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45107987 - 45108270
Alignment:
| Q |
14 |
aatattggcactgctggtcctaaaattagcccagcctacacacaaataataac-ca---cacaa--aattgattacaattaccttaattcatccgaattc |
107 |
Q |
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| T |
45107987 |
aatattggcactgctggtcctaaaattagcccagcctacacaaaaataacaacacaatgcacaatcaattgattacaattaccttaattcatccgaattc |
45108086 |
T |
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| Q |
108 |
aatttaaagaccttatttcatgaatggaacattcacggtgtatagcattgtcgatataattataaacgagggtttagaaacatgcatcttgttatacatg |
207 |
Q |
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| T |
45108087 |
aatttaaagaccttatttcatgaatggaacattcatggtgtatagcattgtcgatataattataaatgagggtttagaaacatgcatcttgttatacatg |
45108186 |
T |
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| Q |
208 |
gaactgaagcatgttttgctctatgctatgctaattttcctatcctactatcttgcaacaaggaaatacttgtattacaagtta |
291 |
Q |
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| T |
45108187 |
gaactgaagcatgttttgctctatgctatgctaattttcctatcctactatcttgcaacaaggaaatacttgtattacaagtta |
45108270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 351 - 471
Target Start/End: Original strand, 45108337 - 45108457
Alignment:
| Q |
351 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaacttcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
450 |
Q |
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| T |
45108337 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaactgcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
45108436 |
T |
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| Q |
451 |
tgaagaaatactgggaaagag |
471 |
Q |
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| T |
45108437 |
tgaagaaatactgggaaagag |
45108457 |
T |
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