View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20218_high_5 (Length: 439)
Name: NF20218_high_5
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 82 - 366
Target Start/End: Complemental strand, 34021260 - 34020979
Alignment:
| Q |
82 |
ccaactaagcatttatccatgaatttggagtttctttgcacactgcgaatcaaatgttcaaataacactcaaattcatgttttacaaaataaatcatgtt |
181 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34021260 |
ccaactaagcatttatccatggatttggagtttctttgcacactgcgaatcaaatgttcaaataacactcaaattcatgttttacaaaataaatcatgtt |
34021161 |
T |
|
| Q |
182 |
acataaaataaacatgaataaatcagccaaatgagagaatatgtaactcctatgatataaatcttatgaaatttcaacaaatatgcaatatcaattaata |
281 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34021160 |
acataaaataagcatgaataaatcagacaaatgagagaatatgtaactcctatgatat-actcttatgaaatttcaacaaatatgcaatatcaattaata |
34021062 |
T |
|
| Q |
282 |
tgtaacccctatagttgaaaacgaaattccattcaatatgtaagtagtaccaataattacttcggaagtatgtagagtatttatt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34021061 |
tgtaacccctatagttgaaaacgaaattccattca--atgtaagtagtaccaataattacttcggaagtatgtagagtatttatt |
34020979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 431
Target Start/End: Original strand, 35805867 - 35806014
Alignment:
| Q |
293 |
tagttgaaaacgaaattccattcaatatgtaagtagtaccaataattacttcgg----aagtatgt---agagtatttattgaacttattattaagctaa |
385 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35805867 |
tagttgaaaacgaaattccattca--atgtaagtaggaccaataattgcttcggaaataagtatgtagaagagtatttattgaacttattattaagctaa |
35805964 |
T |
|
| Q |
386 |
aatctaggttcagtg----ttcacatttctcatcataaatatgatgatgt |
431 |
Q |
| |
|
|||| | |||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
35805965 |
aatccaagttcagtgtgtttacacatttctcatcataactatgatgatgt |
35806014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 29123641 - 29123730
Alignment:
| Q |
201 |
aaatcagccaaatgaga---gaatatgtaactcctatgatataaatcttatgaaatttcaacaaatatgca---atatcaattaatatgt |
284 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
29123641 |
aaatcagacaaatgagaaaagaatatgtaacttctatgatataaatcttttgaaatttcaacaaatatgcatggatatcaattgatatgt |
29123730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University