View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20218_low_18 (Length: 287)
Name: NF20218_low_18
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_18 |
 | |
|
| [»] scaffold1377 (1 HSPs) |
| | |
|
| [»] scaffold1089 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15399297 - 15399516
Alignment:
| Q |
1 |
ttcgttatgtgcaatatattttgcggaatgcaagacttttacaagatatgacaatcaactttaatggggtctcttctgaaggaatggttttggaaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15399297 |
ttcgttatgtgcaatatattttgcggaatgcaagacttttacaagatatgactatcaactttaatggggtctcttatgaaggaatggttttggaaaaatg |
15399396 |
T |
|
| Q |
101 |
tcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttgattttttccgtcgttctttgtatcggtagcgtttctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15399397 |
tcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttgattttttccgtcgttctttgtatcggtagcgtttctca |
15399496 |
T |
|
| Q |
201 |
ttagtttctatttctaatat |
220 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
15399497 |
ttagtttctatttataatat |
15399516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15411084 - 15411303
Alignment:
| Q |
1 |
ttcgttatgtgcaatatattttgcggaatgcaagacttttacaagatatgacaatcaactttaatggggtctcttctgaaggaatggttttggaaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15411084 |
ttcgttatgtgcaatatattttgcggaatgcaagacttttacaagatatgactatcaactttaatggggtctcttatgaaggaatggttttggaaaaatg |
15411183 |
T |
|
| Q |
101 |
tcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttgattttttccgtcgttctttgtatcggtagcgtttctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15411184 |
tcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttgattttttccgtcgttctttgtatcggtagcgtttctca |
15411283 |
T |
|
| Q |
201 |
ttagtttctatttctaatat |
220 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
15411284 |
ttagtttctatttataatat |
15411303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 14435562 - 14435482
Alignment:
| Q |
81 |
ggaatggttttggaaaaatgtcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcattt |
161 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||| || | ||||||||||| |||| |
|
|
| T |
14435562 |
ggaatgattttggaaaggagtcaaattatagaagaattatcttcttgtccaaggatatctcctgcatgtaaactttaattt |
14435482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 7819950 - 7819863
Alignment:
| Q |
76 |
ctgaaggaatggttttggaaaaatgtcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttga |
163 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||| || || | ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
7819950 |
ctgaaagaatggttttggaaaaaagtgcaattatagaagaattgtcctcctatccaaggatatctcaaggatgtaaactttcatttga |
7819863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 7872392 - 7872453
Alignment:
| Q |
100 |
gtcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcattt |
161 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
7872392 |
gtcagattaaagaagaattatcctcttgtccaacgatatcttcaagatgtaaactttcattt |
7872453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 14438208 - 14438148
Alignment:
| Q |
100 |
gtcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatt |
160 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||| || |||| ||||||||||||||| |
|
|
| T |
14438208 |
gtcaaattatagaagaattatcctcttgtccaaggatttctccagcatgtaaactttcatt |
14438148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 7818469 - 7818516
Alignment:
| Q |
83 |
aatggttttggaaaaatgtcagattatagaagaattatcttcttgtcc |
130 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
7818469 |
aatgcttttggaaaaatgtctgattatagaagaattgtcttcatgtcc |
7818516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 14438294 - 14438247
Alignment:
| Q |
14 |
atatattttgcggaatgcaagacttttacaagatatgacaatcaactt |
61 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||||| |||| |
|
|
| T |
14438294 |
atatattttgcagaatgcgaggcttttacaagatatgacaatcgactt |
14438247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 14018807 - 14018882
Alignment:
| Q |
88 |
ttttggaaaaatgtcagattatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttga |
163 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| || | | ||| |||||| | ||||||||||||||||||||| |
|
|
| T |
14018807 |
ttttggaaaaaggtcagattaaagaagaattatcctccttttcaaggatatctcgaggatgtaaactttcatttga |
14018882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 1385 - 1343
Alignment:
| Q |
14 |
atatattttgcggaatgcaagacttttacaagatatgacaatc |
56 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||||| |
|
|
| T |
1385 |
atatattttgcagaatgcgaggcttttacaagatatgacaatc |
1343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 570 - 512
Alignment:
| Q |
105 |
attatagaagaattatcttcttgtccaatgatatcaccaggatgtaaactttcatttga |
163 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| || |||| |||||||||| ||||||| |
|
|
| T |
570 |
attatagaagaattgtcctcttgtccaaggatttctccagcatgtaaacttacatttga |
512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University