View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_20 (Length: 260)
Name: NF20218_low_20
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46327706 - 46327945
Alignment:
| Q |
1 |
aagcatgactcaatcaacttaatatagaatgaatactgtgcattctctttagagagtaatactgaatgtattagggtctagttgttttattgcaagtctg |
100 |
Q |
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| T |
46327706 |
aagcatgactcgatcaacttaatatagaatgaatactgtgcattctctttagagagtaatgctgaatgtattagggtctagttgttttattgcaagtctg |
46327805 |
T |
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| Q |
101 |
cactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtatcttccctctctaa |
200 |
Q |
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| T |
46327806 |
cactggttttaattatatactcgtcatatgatatcataatgggtataaattaagaagttagtctattttcctttcttttagctgtatcttccctctctaa |
46327905 |
T |
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| Q |
201 |
aatttggaatgcaacgatactcgaattggaccctatcatt |
240 |
Q |
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| T |
46327906 |
aatttggaatgcaacgatactcgaattggaccctatcatt |
46327945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 7476284 - 7476364
Alignment:
| Q |
128 |
atgatatcataatgggtataaattaagaagttagtctattttcctttcttttagc--tgtatcttccctctctaaaatttg |
206 |
Q |
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| T |
7476284 |
atgacatcataatggacatgaatgaagaagttaatctattttccgttcttttagctatgtatcattcctctctaaattttg |
7476364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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