View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_26 (Length: 233)
Name: NF20218_low_26
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_26 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 13399 - 13600
Alignment:
| Q |
13 |
agcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13399 |
agcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
13498 |
T |
|
| Q |
113 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13499 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
13598 |
T |
|
| Q |
213 |
cc |
214 |
Q |
| |
|
|| |
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|
| T |
13599 |
cc |
13600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 19079 - 19280
Alignment:
| Q |
13 |
agcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19079 |
agcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
19178 |
T |
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| Q |
113 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19179 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
19278 |
T |
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| Q |
213 |
cc |
214 |
Q |
| |
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|| |
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| T |
19279 |
cc |
19280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 1293195 - 1292994
Alignment:
| Q |
13 |
agcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293195 |
agcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaatagaca |
1293096 |
T |
|
| Q |
113 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293095 |
gacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatcttttgtaacggcaccaacac |
1292996 |
T |
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| Q |
213 |
cc |
214 |
Q |
| |
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|| |
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|
| T |
1292995 |
cc |
1292994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 44635548 - 44635642
Alignment:
| Q |
70 |
tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaa |
164 |
Q |
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|||||| | ||| |||| |||||| ||| ||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
44635548 |
tctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaa |
44635642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 12281757 - 12281674
Alignment:
| Q |
70 |
tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctac |
153 |
Q |
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|||||||||||| |||| |||||| || ||||||| || ||||| ||||||||||| ||||||||||| |||||||| ||||| |
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| T |
12281757 |
tcttttcatttgagcaacttcaatgtctaattgtgagtacacagagacaaattcacctattgccatgctgcatgcaccggctac |
12281674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 37742418 - 37742345
Alignment:
| Q |
89 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
162 |
Q |
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| T |
37742418 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagc |
37742345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Complemental strand, 37749488 - 37749415
Alignment:
| Q |
89 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
162 |
Q |
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||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||||||| | |||||| |
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| T |
37749488 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagc |
37749415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 37752300 - 37752373
Alignment:
| Q |
89 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
162 |
Q |
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||||| |||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||| ||||| | |||||| |
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| T |
37752300 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcacctgctactaaaccagc |
37752373 |
T |
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