View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_28 (Length: 214)
Name: NF20218_low_28
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 9031640 - 9031454
Alignment:
| Q |
14 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaagatctacacaatcaaaaataag-taat |
112 |
Q |
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| T |
9031640 |
cagatatcctttgcaccttgttcttgttaacaataactcgatggacgtggctcttatattttccattggttaagatctacacaatcaaaaataagttatt |
9031541 |
T |
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| Q |
113 |
ctttttagttatattaacaaggaaagaaggatttaatattattcaaaagcccaaagtcatatcagatttgaatgttataaagttagt |
199 |
Q |
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| T |
9031540 |
ttttttagttggattaacaagagaataaggatttaatattattcaaaagcccaaagttatatcagatttgaatgttctaaagatagt |
9031454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 9039050 - 9038976
Alignment:
| Q |
14 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaaga |
88 |
Q |
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| T |
9039050 |
cagagatcctttgcaacttgttctttttaacaataactcgatggacatggctcttatattttccattggttaaga |
9038976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 9048488 - 9048408
Alignment:
| Q |
14 |
cagagatcctttgcaccttattcttgttaacaataactcgatggacatggctcttatattttccattggttaagatctaca |
94 |
Q |
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| T |
9048488 |
cagagatcctttgcaccttgttgttgttaacaattactcggtggacatgactcttatatttcccattagttaaaatctaca |
9048408 |
T |
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