View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_4 (Length: 477)
Name: NF20218_low_4
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_4 |
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| [»] scaffold0061 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 752281 - 751830
Alignment:
| Q |
17 |
agaaaccataggagaaggttgagagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
752281 |
agaaaccataggagaaggttgagagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggttt |
752182 |
T |
|
| Q |
117 |
ttatcattgatattcatcaatggaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggag |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
752181 |
ttatcattgatattcatcaatggtggataaatgtgtgcttgagacatgttgttttgcgggagattgaagtagctacttggatttgagtccaagtaaggag |
752082 |
T |
|
| Q |
217 |
aactattaaggttatcaatcttgtttgtttcaagagctattgattttcccctaagatctccttttagcatattcatctttagattgcatgcatcaagctt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
752081 |
aactattaaggttatcaatcttgtttgtttcaagagctattgattttcccctaagatctccctttagcatattcatctttagattgcatgcatcaagctt |
751982 |
T |
|
| Q |
317 |
aaaatccaagatcctagcaaataaccttaattgttcatctgcaagaaaattgaatgattcatcccaagtttgatacttcatcttaaacttctctttgcgc |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751981 |
aaaatccaagatgctagcaaataaccttaattgttcatcttcaagaaaattgaatgattcatcccaagtttgatacttcatcttaaacttctctttgcgc |
751882 |
T |
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| Q |
417 |
actttggaaatctcaaattcaacttttttcatcctttctttaaaatattctt |
468 |
Q |
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| T |
751881 |
actttggaaatctcaaattcaacttttttcatcctttctttaaaatattctt |
751830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 39 - 468
Target Start/End: Original strand, 7327174 - 7327603
Alignment:
| Q |
39 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
138 |
Q |
| |
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|||||||| ||| | |||| |||| ||| ||||||||||||||||| | |||| ||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
7327174 |
gagctttgcgcattggaaatcatagaagaaggttgagagctttgtccgagttgaagttgccaaaaccctaatggggttttatcattaatattcatcaatg |
7327273 |
T |
|
| Q |
139 |
gaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttatcaatctt |
238 |
Q |
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| T |
7327274 |
gaggatgaatttttgcttcaaacatgttgttttgcatgagattgaagtagctacttggctttgaggctaagttagggttacctataagtatatcaacctt |
7327373 |
T |
|
| Q |
239 |
gtttgtttcaagagctattgattttcccctaagatctccttttagcatattcatctttagattgcatgcatcaagcttaaaatccaagatcctagcaaat |
338 |
Q |
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|| || |||| ||||||||| |||||| ||||||||||||||||||||| |||| || |||| || ||||||||||| ||||||| || ||||||||| |
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| T |
7327374 |
gtgtgattcatgagctattgtttttcctttaagatctccttttagcatatgcatcctttgattacaagcatcaagcttggaatccaacatgctagcaaat |
7327473 |
T |
|
| Q |
339 |
aaccttaattgttcatctgcaagaaaattgaatgattcatcccaagtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaa |
438 |
Q |
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|||| | |||||| || |||| ||||| | ||||||||||| | | ||||| ||||||| | |||||||||||||||||||||||||||||||| || |
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| T |
7327474 |
gacctcacttgttccactccaagtgaattgtaagattcatcccaggatggatacatcatctttatcttctctttgcgcactttggaaatctcaaatttaa |
7327573 |
T |
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| Q |
439 |
cttttttcatcctttctttaaaatattctt |
468 |
Q |
| |
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||||||||||||||| |||||||| |||| |
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| T |
7327574 |
tttttttcatcctttccttaaaatactctt |
7327603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 277 - 468
Target Start/End: Complemental strand, 746118 - 745927
Alignment:
| Q |
277 |
cttttagcatattcatctttagattgcatgcatcaagcttaaaatccaagatcctagcaaataaccttaattgttcatctgcaagaaaattgaatgattc |
376 |
Q |
| |
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||||| |||||||||||||| ||| ||||| ||||||||| ||||||| | |||| ||||| |||| |||||||||| | ||| | ||||| | ||||| |
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| T |
746118 |
cttttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatttccaaaagaattgtaagattc |
746019 |
T |
|
| Q |
377 |
atcccaagtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaaatattctt |
468 |
Q |
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|||||||||| ||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
746018 |
atcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccaattcaacttttttcatcctttccttaaaatattctt |
745927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 231
Target Start/End: Complemental strand, 746329 - 746137
Alignment:
| Q |
39 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
138 |
Q |
| |
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|||||||||||| | ||||||||| |||| |||||||||||||||| || || ||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
746329 |
gagctttgtgcactggaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatg |
746230 |
T |
|
| Q |
139 |
gaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttat |
231 |
Q |
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||| ||||| | ||||||| |||||| | |||| ||||||||||| | ||| || ||||||| |||||||||||||||| ||||||||| |
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| T |
746229 |
gagagtaaattttaacttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttat |
746137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 69 - 468
Target Start/End: Original strand, 51792294 - 51792693
Alignment:
| Q |
69 |
ggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatggaggataaatgtgtgcttgagacatgttgt |
168 |
Q |
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||||||||||||||||| ||| |||||||||||||||||| |||||||||||| | |||||||||| |||||||||| | ||||||||||||||| | |
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| T |
51792294 |
ggttgagagctttgtcccgattgaagtggccaaaaccctaaggggtttttatcactaatattcatcattggaggataagtttgtgcttgagacatggaat |
51792393 |
T |
|
| Q |
169 |
tttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttatcaatcttgtttgtttcaagagctattgattttcccct |
268 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | |||| |||||| ||| |||| ||||| | ||||| || |||| ||||||||| ||||||| | |
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|
| T |
51792394 |
tttgcatgagattgaagtagtaacttggatttggggtcaaggaaggagtactgataagtttatctaccttgtgtgattcatgagctattgtttttccctt |
51792493 |
T |
|
| Q |
269 |
aagatctccttttagcatattcatctttagattgcatgcatcaagcttaaaatccaagatcctagcaaataaccttaattgttcatctgcaagaaaattg |
368 |
Q |
| |
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||||||| |||||||||||| | ||||| |||| || |||||||||||| |||| | || |||||||| | |||||||| || ||||| ||||| |
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| T |
51792494 |
aagatcttcttttagcatatgcttcttttgattacaagcatcaagcttagcttccagtttgcttgcaaataatatcaattgttccgctccaagagaattg |
51792593 |
T |
|
| Q |
369 |
aatgattcatcccaagtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaaatattctt |
468 |
Q |
| |
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|| ||||||| ||||||| ||||| ||||||| ||||||||||| |||||||||| |||||| ||||||| |||| | || ||||| |||||||| |||| |
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| T |
51792594 |
aaagattcattccaagttggatacatcatctttaacttctctttacgcactttggtaatctcgaattcaagttttctaattctttccttaaaatactctt |
51792693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 2262 - 2450
Alignment:
| Q |
126 |
atattcatcaatggaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaa |
225 |
Q |
| |
|
||||| ||||||||||| ||||| | ||||||||||||||| ||||| || ||||||| | |||||||||||||| |||||| |||| |||| ||| |
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| T |
2262 |
atattaatcaatggaggttaaatttctgcttgagacatgtt---ttgcatgaaattgaagcaattacttggatttgaggccaagtgaggaatactaataa |
2358 |
T |
|
| Q |
226 |
ggttatcaatcttgtttgtttcaagagctattgattttcccctaagatctccttttagcatattcatctttagattgcatgcatcaagctta |
317 |
Q |
| |
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| ||||||| ||||| || |||| ||||||||| ||||||| || ||| ||||||||||||||| |||||| || | || |||||||||||| |
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| T |
2359 |
gtttatcaaccttgtgtgattcatgagctattgcttttcccttatgatatccttttagcatatttatcttttgaatacaagcatcaagctta |
2450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 126 - 317
Target Start/End: Original strand, 7773 - 7961
Alignment:
| Q |
126 |
atattcatcaatggaggataaatgtgtgcttgagacatgttgttttgcacgagattgaagtagctacttggatttgagtccaagtaaggagaactattaa |
225 |
Q |
| |
|
||||| ||||||||||| ||||| | ||||||||||||||| ||||| || ||||||| | |||||||||||||| |||||| |||| |||| ||| |
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|
| T |
7773 |
atattaatcaatggaggttaaatttctgcttgagacatgtt---ttgcatgaaattgaagcaattacttggatttgaggccaagtgaggaatactaataa |
7869 |
T |
|
| Q |
226 |
ggttatcaatcttgtttgtttcaagagctattgattttcccctaagatctccttttagcatattcatctttagattgcatgcatcaagctta |
317 |
Q |
| |
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| ||||||| ||||| || |||| ||||||||| ||||||| || ||| ||||||||||||||| |||||| || | || |||||||||||| |
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| T |
7870 |
gtttatcaaccttgtgtgattcatgagctattgcttttcccttatgatatccttttagcatatttatcttttgaatacaagcatcaagctta |
7961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 2531 - 2595
Alignment:
| Q |
396 |
atcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaa |
460 |
Q |
| |
|
||||| ||| ||||||| ||||| ||||||||| |||||||||||||| |||| |||| ||||| |
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|
| T |
2531 |
atcttcaacatctctttctgcactctggaaatcttaaattcaactttttccatcttttccttaaa |
2595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 8042 - 8106
Alignment:
| Q |
396 |
atcttaaacttctctttgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaa |
460 |
Q |
| |
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||||| ||| ||||||| ||||| ||||||||| |||||||||||||| |||| |||| ||||| |
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| T |
8042 |
atcttcaacatctctttctgcactctggaaatcttaaattcaactttttccatcttttccttaaa |
8106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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