View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_7 (Length: 431)
Name: NF20218_low_7
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 155 - 427
Target Start/End: Original strand, 33659769 - 33660041
Alignment:
| Q |
155 |
cagacagatcgttagccttttcccttccccccaacagactagtgcctagcatccttcatccataatttaatatatattgttcaatgattttccaatttct |
254 |
Q |
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| T |
33659769 |
cagacagatcgttagccttttcccttccccctaacagactagtgcctagcatccttcatccataatttaatatatattgttcaatgattttccaatttct |
33659868 |
T |
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| Q |
255 |
atgctttcccatgttaaagtcaaataattatatcatgcacatgtatacgaacatcattctcaagacaaagttttgagcttcaactttcattccaaataat |
354 |
Q |
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| T |
33659869 |
atgctttcccatgttaaagtcaaataattatatcatgcacatgtatacgaacatcattctcaaaacaaagttttgtgcttcaactttcattccaaataat |
33659968 |
T |
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| Q |
355 |
gtgctagtgttctcccaaggcgtgaaaacgcaatttttccacataaatgtcaagcttaaaatatctcctatgc |
427 |
Q |
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| T |
33659969 |
gtgctagtgttctcccacggcatgaaaacgcaatttttccacataaatgtcaagcttaaaatatctcctatgc |
33660041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33659613 - 33659716
Alignment:
| Q |
1 |
ttaattacaaaaataccactgttt-cacttgtgtccaaaatatatcaaactattttctgttcaaaatattgaaagcagataataaagtggaaacagtata |
99 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33659613 |
ttaattacaaaaataccaatgttttcacttgtgtccaaaatatatcaaactattttctgttcaaaatattgaaagcagataataaagtggaaacaatata |
33659712 |
T |
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| Q |
100 |
tttt |
103 |
Q |
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|||| |
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| T |
33659713 |
tttt |
33659716 |
T |
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