View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_8 (Length: 414)
Name: NF20218_low_8
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 33116423 - 33116025
Alignment:
| Q |
16 |
gtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaaccc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33116423 |
gtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagagaaccaaacgcattcaaccc |
33116324 |
T |
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| Q |
116 |
agcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116323 |
agcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctaca |
33116224 |
T |
|
| Q |
216 |
aattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaagattcag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116223 |
aattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaagattcag |
33116124 |
T |
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| Q |
316 |
cttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttccttcct |
414 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116123 |
cttccttcaattccattgcaactgattcctataaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttccttcct |
33116025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 33119398 - 33119329
Alignment:
| Q |
190 |
agtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaaacctct |
259 |
Q |
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| T |
33119398 |
agtacatgacagtgttgattccaacaaattgttggaaaattgcaagtcccattcctgcatataaacctct |
33119329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 1083989 - 1084381
Alignment:
| Q |
16 |
gtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaaccc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1083989 |
gtgataagacaactccaaacaaactaatcaaagctagcttctttctcccggttttatcaatgaaatatatgcttataagcgaaccaaacgtattcaaccc |
1084088 |
T |
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| Q |
116 |
agcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1084089 |
agcagtgataagagacagaagcattgcggtttgattagatgcaaaaccagctagttgaacaatagttgggctgaagtacattacgatattgattcctaca |
1084188 |
T |
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| Q |
216 |
aattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtgatcatacttatcttttctgaagattcag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1084189 |
aattgttggaatatttgaaggcccattcctgcatacaaacctcttctcacacttgtagtttttaaaagtgtcatcatacttatcttttctgaagattcag |
1084288 |
T |
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| Q |
316 |
cttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084289 |
cttccttcaattccattgcaactgattcctgtaaagcctgaatttcagcatcaacttcttctgctgggtaaatctttctcagaattgcttttc |
1084381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 54 - 262
Target Start/End: Original strand, 21559150 - 21559358
Alignment:
| Q |
54 |
ttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataagagacagaagcattgcggtttgattag |
153 |
Q |
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||||| || ||||| || ||||| || |||||||| | || ||||||||| ||||| | ||||| |||| || |||||||| | ||| |||| || | |
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| T |
21559150 |
ttcttccttccggtcttgtcgataaagtatatgctcaaaatcgaaccaaatgcattaattccagctgtgacgagcgacagaagaagtgctgttttgtttg |
21559249 |
T |
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| Q |
154 |
atgcaaaaccagctagttgaacaatagttgggctgaagtacattacggtattgattcctacaaattgttggaatatttgaaggcccattcctgcatacaa |
253 |
Q |
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| T |
21559250 |
atgcaaaaccagctagttgaacgatggttggactgtagtacattactgtgttgattccgacaaattgttggaagatttgtagtcccactcctgcatataa |
21559349 |
T |
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| Q |
254 |
acctcttct |
262 |
Q |
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||||||||| |
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| T |
21559350 |
acctcttct |
21559358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 21492446 - 21492547
Alignment:
| Q |
35 |
caaactaatcaaagctagcttctttctcccggttttatcgatgaaatatatgcttataagcgaaccaaacgcattcaacccagcagtgataagagacaga |
134 |
Q |
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|||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| | || ||||| || ||||| | |||| |||||| ||||||||| |
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| T |
21492446 |
caaactaatcaatgcaagtttcttcctcccagttttgtcgatgaaatatatgctcagaattgaaccgaatgcattgaggccagaagtgattagagacaga |
21492545 |
T |
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| Q |
135 |
ag |
136 |
Q |
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|| |
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| T |
21492546 |
ag |
21492547 |
T |
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