View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20218_low_9 (Length: 393)
Name: NF20218_low_9
Description: NF20218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20218_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 174 - 379
Target Start/End: Complemental strand, 6970889 - 6970684
Alignment:
| Q |
174 |
attcaaggcagaaaagacaaaagagataaatagatggtcgtaataaataggatagtagaaataaagaatacagactcattacaatcacatcaagtgcatt |
273 |
Q |
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| T |
6970889 |
attcgaggaagaaaagacaaaagaaataaatagatggtcgtaataaatgggatagtagaaataaagaatactgacttattccaatcacatcaagtgcatt |
6970790 |
T |
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| Q |
274 |
taaccttaatttttgctaatttcaagaattgtgaaccccaatttaaaaccatcatctaaacaaaaacaaaagattatatacacacacataaaatcatgat |
373 |
Q |
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| T |
6970789 |
taaccttaatttttgctaatttcaagaattgtgaaccccaatttaaaaccatcatctaaacaaaaacaaaagattatatacacacacataaaatcatgat |
6970690 |
T |
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| Q |
374 |
tgttgt |
379 |
Q |
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|||||| |
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| T |
6970689 |
tgttgt |
6970684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 6971014 - 6970858
Alignment:
| Q |
1 |
tgagttttatttaatataatatataattcagtataatcataatacatattgcttgatctttgatcaaacaactatgatctactatatacattgacaatac |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971014 |
tgagttttatttaatataatatataatttagtataatcataatacatattgcttgatctttgatcaaacaactatgatctactatatacattgacaatac |
6970915 |
T |
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| Q |
101 |
agtgatttcattgtaccaaatccagattcgaggaagaaaagacaaaagagataaata |
157 |
Q |
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| T |
6970914 |
agtgatttcgttgtaccaaatccagattcgaggaagaaaagacaaaagaaataaata |
6970858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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