View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20219_high_1 (Length: 608)
Name: NF20219_high_1
Description: NF20219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20219_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 291 - 592
Target Start/End: Original strand, 41747900 - 41748201
Alignment:
| Q |
291 |
tccggcgactcaacggcggccggtgatttgcaccgggaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagacccc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747900 |
tccggcgactcaacggcggccggtgatttacaccgggaagaaatatcgtggagtgagacagagaccttggggaaaatgggcggcggagataagagacccc |
41747999 |
T |
|
| Q |
391 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748000 |
aaactcaaatttcgacggtggttgggaacttacaacactgctgaagaagctgctatggagtatgataaagccgccattgaaatacgtggtgcagacgcgc |
41748099 |
T |
|
| Q |
491 |
ttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttc |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41748100 |
ttacgaatttcattcaacccacgacaaagaaggttgttataaactccagcagcgatgaatgcgttgtttctgccacgtcagtacttcaatgttgtacttc |
41748199 |
T |
|
| Q |
591 |
tt |
592 |
Q |
| |
|
|| |
|
|
| T |
41748200 |
tt |
41748201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 41747619 - 41747841
Alignment:
| Q |
10 |
aacaatatgcctaaacaaccttctacacctcctcctattcctaacatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaacta |
109 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41747619 |
aacaacatgcccaaacaaccttctacacctcctcccattcccaacatcatcaaacacactcatcacttcacacaaatcaacaacatcatgccaaaaacta |
41747718 |
T |
|
| Q |
110 |
tacaaatacgttacaccgaccctgacgccacggattcttcttctgacgaagaagaaaatccaacacattccaattttacccctcgctgcagaatcaaaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
41747719 |
tacaaatacgttacaccgaccctgacgccacggattcttcttctgacgaagaagaaaatccaatacattccaatattacccctcgccgcagaatcaaaac |
41747818 |
T |
|
| Q |
210 |
tttcatccacgacattgtgatcg |
232 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41747819 |
tttcatccacgacattgtgatcg |
41747841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 441
Target Start/End: Original strand, 8584973 - 8585005
Alignment:
| Q |
409 |
tggttgggaacttacaacactgctgaagaagct |
441 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
8584973 |
tggttgggaacttacaacagtgctgaagaagct |
8585005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 2361369 - 2361307
Alignment:
| Q |
327 |
gaagaaatatcgtggagtgagacaaagaccttggggaaaatgggcggcggagataagagaccc |
389 |
Q |
| |
|
||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2361369 |
gaagaaataccgtggagtgaggcagagaccatggggaaaatgggcggcggagataagagaccc |
2361307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 13409881 - 13409927
Alignment:
| Q |
340 |
ggagtgagacaaagaccttggggaaaatgggcggcggagataagaga |
386 |
Q |
| |
|
||||||||||||||||| |||||||||||||| || || |||||||| |
|
|
| T |
13409881 |
ggagtgagacaaagaccatggggaaaatgggcagcagaaataagaga |
13409927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University