View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20219_low_2 (Length: 563)
Name: NF20219_low_2
Description: NF20219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20219_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 45624544 - 45624067
Alignment:
| Q |
20 |
gccttcgtatacaaccctgacaaacctcgacaaaatggaccggcccgattcaaaccatgggacttaatagcagcagtttcagtctgcttaacaacaccaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45624544 |
gccttcgtatacaaccctgacaaacctcgacaaaatggaccggcccgattcaaaccatgggacttaatagcagcagtttcagtctgcttaacaacgccaa |
45624445 |
T |
|
| Q |
120 |
ctttataccctgcactaacaagcctcctcacatggacatttaatcgaaaagttggtatgctagcagttaaaaaattatgatccatatgagcataaatacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624444 |
ctttataccctgcactaacaagcctcctcacatggacatttaatcgaaaagttggtatgctagcagttaaaaaattatgatccatatgagcataaatacc |
45624345 |
T |
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| Q |
220 |
caaaacccttgcagcattctcagcatcttcgccgaaaaatcgatacttgtaaccaacttcaatcattaaaagaacatcaggatacttagctttgagttcc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45624344 |
caaaacccttgcagcattctcagcatcttcgccgaaaaatcgatacttgtaaccaacttcaatcattaaaagaacatcagggtacttagctttgagttcc |
45624245 |
T |
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| Q |
320 |
actacctgatgctctaaaggagtaaactttacaggtttggaagatgaaggaggttgtggggttggattagaaggttctagaagcttctggaggaagcgtt |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624244 |
actacctgatgctctaaaggagtaaattttacaggtttggaagatgaaggaggttgtggggttggattagaaggttctagaagcttctggaggaagcgtt |
45624145 |
T |
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| Q |
420 |
ggtggagagagggaataggtgaagagagtttgggttgtttgttaggggatgctgtgagttgagagattaagcggcgtt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45624144 |
ggtggagagagggaataggtgaagagagtttgggttgtttgttaggggatgctgtgagttgagagattaagcggcgtt |
45624067 |
T |
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