View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20219_low_3 (Length: 323)
Name: NF20219_low_3
Description: NF20219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20219_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 48525443 - 48525142
Alignment:
| Q |
18 |
caaacgaagatataaattgtcctatgagcttttcgaagtggctgaaaagagatggaccaaatccacatgagctaactggagctattgtaggtggacctga |
117 |
Q |
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| T |
48525443 |
caaacgaagatataaattgtcctatgagcttttcgaagtggctgaaaagagatggaccaaatccacatgagctaactggagctattgtaggtggacctga |
48525344 |
T |
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| Q |
118 |
catcaatgacaaattcgatgataatcgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtgctctagcaaagcttgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48525343 |
catcaatgacaaattcgatgataatcgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtgctctagcaaagcttgct |
48525244 |
T |
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| Q |
218 |
tctttgggttaacttagcttaatgtcacgttaacgtgattaccccaacatagttaattgagaggggagaccttactaaaggtcgtaactatattcttcga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
48525243 |
tctttgggttaacttagcttaatgtcacgttaacgtgattaccccaacatagttaattgagaggggagaccttactaaaggtcgtaactacatttttcga |
48525144 |
T |
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| Q |
318 |
ca |
319 |
Q |
| |
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|| |
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| T |
48525143 |
ca |
48525142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 7220941 - 7220694
Alignment:
| Q |
18 |
caaacgaagatataaattgtcctatgagcttttcgaagtggctgaaaagagatggaccaaatccacatgagctaactggagctattgtaggtggacctga |
117 |
Q |
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|||||||||| ||||| ||||| | |||||| ||| ||||| ||||||||| |||||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
7220941 |
caaacgaagagataaactgtcccacaagctttaagaaatggctagaaagagatgcaccaaatccacatgagctaactggggccattgttggtggacctga |
7220842 |
T |
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| Q |
118 |
catcaatgacaaattcgatgataatcgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtgctctagcaaagcttgct |
217 |
Q |
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|||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
7220841 |
catcaacgacaagttcaatgataaacgtacagattcacctaagacggaaccttgcacatatgttaattcccttgcagtcggtgttctagcaaagcttgct |
7220742 |
T |
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| Q |
218 |
tctttgggttaacttagcttaatgtcacgttaacgtgattaccccaac |
265 |
Q |
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| T |
7220741 |
tctttgggttaacttagcttaatttcatgttggtgtaattaccccaac |
7220694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 250
Target Start/End: Original strand, 50308236 - 50308351
Alignment:
| Q |
135 |
atgataatcgtacagattcacctaagactgaaccttgcacatatgttaattctcttgcagctggtgctctagcaaagcttgcttctttgggttaacttag |
234 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||| ||||||||||| ||||||| ||| |
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| T |
50308236 |
atgataatcgtacggattcacctaagactgaaccttgcacgtatgttaattcgcttgcagttggtgctctaataaaacttgcttctttaggttaacctag |
50308335 |
T |
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| Q |
235 |
cttaatgtcacgttaa |
250 |
Q |
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|||||| ||| ||||| |
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| T |
50308336 |
cttaatttcatgttaa |
50308351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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